BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0064.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA synthe...   426   e-120
gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase [Herba...   130   2e-31

>gi|300312871|ref|YP_003776963.1| glutamyl/glutaminyl-tRNA
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  426 bits (1094), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/286 (73%), Positives = 231/286 (80%)

Query: 7   YVGRFAPSPSGPLHAGSLAAAMASYLDARVHGGRWLLRIEDIDETRTVDGAAHEIETALH 66
           YVGRFAPSPSGPLHAGSL AA+ASYLDARVH GRWLLRIEDIDETRTV GAA +I   L 
Sbjct: 6   YVGRFAPSPSGPLHAGSLVAALASYLDARVHAGRWLLRIEDIDETRTVQGAAQDIIATLA 65

Query: 67  TLGMRWDGPVLVQSERKQRYLDACTRLSGHVYPCGCTRKEIADSSLGTGADGAAIYPGTC 126
            L MR DGPVLVQS+RK RY  A  RL    YPCGC+RKEIADS +GT +DGAA+YPGTC
Sbjct: 66  ALDMRSDGPVLVQSQRKARYQLARDRLGALAYPCGCSRKEIADSRVGTASDGAALYPGTC 125

Query: 127 RHGLAPGKQARTVRLRVPDTGEENEEISFMDRWLGRQRQHLATQAGDFVLKRADGFWAYQ 186
           RHGLAPGKQART+RLRVPD G+  E + F DRWLG Q QHLA + GDFVL+RADGFWAYQ
Sbjct: 126 RHGLAPGKQARTLRLRVPDPGQAGELVQFEDRWLGPQAQHLAAEVGDFVLQRADGFWAYQ 185

Query: 187 LAVVVDDAEQGVTHVVRGADLLGSTARQIYLQRLLGYPTPAYLHVPLVLHNDGEKLSKQN 246
           LAVVVDDAEQGVT +VRGADLL STARQIYLQ LLGYPTP YLHVPL+++  GEK SKQN
Sbjct: 186 LAVVVDDAEQGVTDIVRGADLLDSTARQIYLQGLLGYPTPRYLHVPLLMNETGEKFSKQN 245

Query: 247 GAQALDLARPLEELQRAATFLGLDMTTATEVAAFWEQALPAWQRRL 292
           GAQALDL +PL+ LQ+AA FLGLD   A +   FW  AL  WQ R 
Sbjct: 246 GAQALDLNQPLQALQQAAAFLGLDTGAARDREGFWALALTGWQARF 291


>gi|300312381|ref|YP_003776473.1| glutamyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/250 (37%), Positives = 124/250 (49%), Gaps = 18/250 (7%)

Query: 10  RFAPSPSGPLHAGSLAAAMASYLDARVHGGRWLLRIEDIDETRTVDGAAHEIETALHTLG 69
           RFAPSP+G LH G    A+ S+  AR  GG ++LRIED D  R+   A   I   +  LG
Sbjct: 25  RFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAIIEGMQWLG 84

Query: 70  MRWDGPVLVQSERKQRYLDACTRL--SGHVYPCGCTRKEI-ADSSLGTGADGAAIYPGTC 126
           +  D     Q +R  RY +   ++   G  Y C CT +E+ A       A     Y GT 
Sbjct: 85  LEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYDGTW 144

Query: 127 RHGLAPGK--------QARTVRLRVPDTGEENEEISFMDRWLGRQRQHLATQAGDFVLKR 178
           R    PGK        +   VR + P  GE    +S+ D   G        +  D V+ R
Sbjct: 145 RP--EPGKTLPAIPEGRKPVVRFKNPQDGE----VSWNDVVKGPITIS-NRELDDLVIAR 197

Query: 179 ADGFWAYQLAVVVDDAEQGVTHVVRGADLLGSTARQIYLQRLLGYPTPAYLHVPLVLHND 238
            DG   Y   VVVDD +  +THV+RG D + +T RQI + + LG   P Y HVP++L  D
Sbjct: 198 PDGTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGAD 257

Query: 239 GEKLSKQNGA 248
           GEKLSK++GA
Sbjct: 258 GEKLSKRHGA 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,046,994
Number of extensions: 46015
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)