BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0058.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   452   e-128
gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   340   1e-94

>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  452 bits (1163), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 205/324 (63%), Positives = 258/324 (79%)

Query: 8   TTRDDDSFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKTMEQ 67
           TT  D ++HIAFCVDNHYFR+MGAM+AS+VANNP RRF FHVFAF+++ D ARRM+++E+
Sbjct: 15  TTAADAAWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEE 74

Query: 68  NDKVRVVTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADMLCVG 127
           N  ++VV H++ +  F EF  MIAKSYYSLSTF+RLI+P  LKD TDRVLY+DADMLCVG
Sbjct: 75  NPNIKVVPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVG 134

Query: 128 NVDELAATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKWEENK 187
           +++EL   D+  T ALV  DVGW    GRDGRYSVL LK+ +YFNAG+LYINIP+WE+NK
Sbjct: 135 SLEELMGMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNK 194

Query: 188 ISEQAIQTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAMDSVG 247
           +SE AI+ L+ + +KL FNDQDALNIVLDG+ARY+ +KWNYIYSMI DLK+G+  M  VG
Sbjct: 195 VSEAAIRALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVG 254

Query: 248 DAVFIHFAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRSLFSR 307
           DA  IHFAGL+KPW DWSGH AREL+++YH LSAWSD+PLD APLN+KEMR+++R L  R
Sbjct: 255 DARIIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKR 314

Query: 308 GKPLQGACWYLAHIAAVIRKKLKK 331
           G    G  W    +   +R+KL++
Sbjct: 315 GDYACGLYWNARFLLTALRRKLRR 338


>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  340 bits (872), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 159/309 (51%), Positives = 213/309 (68%), Gaps = 4/309 (1%)

Query: 14  SFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKTMEQNDKVRV 73
           SFHIAFCVDN+YFR+MG  IASIVANNP + FTFHV AF V+ D  RR+K +E   +V+ 
Sbjct: 19  SFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAMYRVKT 78

Query: 74  VTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADMLCVGNVDELA 133
             H+++   F +FS  +  S+YSLS F+RL+IPT+L +VTDRVLYLDAD+LC   +D L 
Sbjct: 79  ELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNRLDALV 138

Query: 134 ATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKWEENKISEQAI 193
             DIS  IA+V PD     +     R + L L +K+YFN GV++INIPKW    I+ + +
Sbjct: 139 DMDISQDIAVVVPDAPVTLQ----RRVAALELAHKEYFNGGVIFINIPKWLAEDITPKTL 194

Query: 194 QTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAMDSVGDAVFIH 253
             LL     + FNDQDALNIVL+G+ARYV+ KWNY+Y +I DL   K A+  VG A+F+H
Sbjct: 195 DALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFVH 254

Query: 254 FAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRSLFSRGKPLQG 313
           FAG +KPW  WS H+A  LF +Y  +S W+D+ LDQ P N KE+R+HSR ++ +G+PL+ 
Sbjct: 255 FAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLES 314

Query: 314 ACWYLAHIA 322
             WYL ++ 
Sbjct: 315 LKWYLRYLG 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 918,373
Number of extensions: 36145
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 131 (55.1 bits)