BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0057.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alph...   563   e-162
gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alph...   327   8e-91

>gi|300312863|ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 265/315 (84%), Positives = 289/315 (91%)

Query: 3   SNGKPSFHIAFCVDNNYFRAMGGTISSIIDNNPGQHFTFHVLAFEVSDEHQRRLKKLEEM 62
            NGKPSFHIAFCVDNNYFRAMGGTI+SI+ NNP QHFTFHVLAFEVS++HQRRLK+LE M
Sbjct: 14  GNGKPSFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAM 73

Query: 63  YPVSTQLHLLDLGSFTQFSHFIGHSHYSLSIFTRLVIPTVLKGQTDRVLYLDADILCVNK 122
           Y V T+LHLLDL  FTQFSHF+GHSHYSLSIFTRLVIPTVL   TDRVLYLDADILC N+
Sbjct: 74  YRVKTELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNR 133

Query: 123 LDELVDMDISGDIAVVVPDAPVTLQRRVAALKLKHNEYFNGGVIFINIDKWISEDITQQT 182
           LD LVDMDIS DIAVVVPDAPVTLQRRVAAL+L H EYFNGGVIFINI KW++EDIT +T
Sbjct: 134 LDALVDMDISQDIAVVVPDAPVTLQRRVAALELAHKEYFNGGVIFINIPKWLAEDITPKT 193

Query: 183 LDALLDSKTDMRFNDQDALNIVLNGRARYISPRWNYLYDLIHDLNVNKFALRPVGKAVFV 242
           LDALL+SKTDMRFNDQDALNIVLNGRARY+SP+WNYLYDLIHDLNVNKFAL+PVGKA+FV
Sbjct: 194 LDALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFV 253

Query: 243 HFAGAVKPWTDWSGHDARHLFRKYLSLTPWADMPLDQEPRNTKEMRMHSRFMYRQGRPLE 302
           HFAGAVKPW  WS H+A  LFR+YL ++PWADM LDQEPRNTKE+RMHSRFMYRQGRPLE
Sbjct: 254 HFAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLE 313

Query: 303 SLKWYIRYLRKRAAR 317
           SLKWY+RYL KRAA+
Sbjct: 314 SLKWYLRYLGKRAAK 328


>gi|300312864|ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha
           1,3-glucosyltransferase WaaO protein [Herbaspirillum
           seropedicae SmR1]
          Length = 338

 Score =  327 bits (838), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 151/308 (49%), Positives = 211/308 (68%), Gaps = 4/308 (1%)

Query: 8   SFHIAFCVDNNYFRAMGGTISSIIDNNPGQHFTFHVLAFEVSDEHQRRLKKLEEMYPVST 67
           ++HIAFCVDN+YFRAMG  ++S++ NNPG+ F FHV AF +SD++ RR++ +EE   +  
Sbjct: 21  AWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEENPNIKV 80

Query: 68  QLHLLDLGSFTQFSHFIGHSHYSLSIFTRLVIPTVLKGQTDRVLYLDADILCVNKLDELV 127
             HL+   +F +F   I  S+YSLS FTRL++P  LK QTDRVLY+DAD+LCV  L+EL+
Sbjct: 81  VPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVGSLEELM 140

Query: 128 DMDISGDIAVVVPD----APVTLQRRVAALKLKHNEYFNGGVIFINIDKWISEDITQQTL 183
            MD+ G  A+VV D    AP     R + L LKH  YFN G+++INI +W    +++  +
Sbjct: 141 GMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNKVSEAAI 200

Query: 184 DALLDSKTDMRFNDQDALNIVLNGRARYISPRWNYLYDLIHDLNVNKFALRPVGKAVFVH 243
            AL+ +   + FNDQDALNIVL+G+ARYI  +WNY+Y +I DL   +  + PVG A  +H
Sbjct: 201 RALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVGDARIIH 260

Query: 244 FAGAVKPWTDWSGHDARHLFRKYLSLTPWADMPLDQEPRNTKEMRMHSRFMYRQGRPLES 303
           FAG VKPW DWSGH AR L+ +Y +L+ W+D+PLD  P N KEMR+++RF+ ++G     
Sbjct: 261 FAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKRGDYACG 320

Query: 304 LKWYIRYL 311
           L W  R+L
Sbjct: 321 LYWNARFL 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 981,982
Number of extensions: 39849
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)