BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0041.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase [Herb...   150   2e-38
gi|300312693|ref|YP_003776785.1| D-xylulose reductase [Herbaspir...    79   7e-17
gi|300309893|ref|YP_003773985.1| glutathione-dependent formaldeh...    52   8e-09

>gi|300310427|ref|YP_003774519.1| L-idonate 5-dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  150 bits (378), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 78/91 (85%)

Query: 1  MQQGIVIHAPHDLRVQELQTAELQPHQLKVKVKAGGICGSDLHYYHNGGFGTVRIKEPMV 60
          MQQG+VIHAPHDLR+Q L T  LQP QLKVKVKAGGICGSDLHYYH+GGFG VRIKEPMV
Sbjct: 1  MQQGLVIHAPHDLRIQALDTGALQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMV 60

Query: 61 LGHEVSGVIAEIGSAIGDIKAGTRIXGAPCR 91
          LGHEVSG IAE+G+A+ DI  GTRI  +P R
Sbjct: 61 LGHEVSGQIAEVGTAVTDIAPGTRIAISPSR 91


>gi|300312693|ref|YP_003776785.1| D-xylulose reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score = 79.0 bits (193), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 2   QQGIVIHAPHDLRVQELQTAE-LQPHQLKVKVKAGGICGSDLHYYHNGGFGTVRIKEPMV 60
            Q +V+ A  +L+++E+   + +    +++++   GICGSDLHYY +G  G  +++ PMV
Sbjct: 1   MQALVLEATRELKLREIDLPQQMGAQDVRIRIHTVGICGSDLHYYTHGSIGPFKVEAPMV 60

Query: 61  LGHEVSGVIAEIGSAIGDIKAGTRIXGAP--CRSSSPTSQK 99
           LGHE SG + E+GSA+  +K G R+   P   R  SP + +
Sbjct: 61  LGHEASGTVIEVGSAVSHLKVGDRVCMEPGIPRLDSPATLR 101


>gi|300309893|ref|YP_003773985.1| glutathione-dependent
          formaldehyde dehydrogenase [Herbaspirillum seropedicae
          SmR1]
          Length = 386

 Score = 52.4 bits (124), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 3  QGIVIHAPHDLRVQELQTAELQ-PHQLKVKVKAGGICGSDLHYYHNGGFGTVRIKEPMVL 61
          + ++ H+ HD+RV+ +    +Q    + +KV A  ICGSDLH Y      T   K   +L
Sbjct: 2  RALLYHSAHDVRVETVPDPIIQEADDVILKVTATAICGSDLHLYRGKIPAT---KAGDIL 58

Query: 62 GHEVSGVIAEIGSAIGDIKAGTRI 85
          GHE  GV+ E G AI  +K G R+
Sbjct: 59 GHEFMGVVVEAGPAIKRLKKGDRV 82


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 332,144
Number of extensions: 12577
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 4
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)