BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0037.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310424|ref|YP_003774516.1| high-affinity gluconate permeas...   204   3e-54
gi|300311081|ref|YP_003775173.1| high-affinity gluconate transpo...   152   1e-38
gi|300311416|ref|YP_003775508.1| gluconate transporter family pr...    99   2e-22

>gi|300310424|ref|YP_003774516.1| high-affinity gluconate permease
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  204 bits (519), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/134 (86%), Positives = 127/134 (94%)

Query: 1   MFGLSNEASLLLNAFLAIVVLIVMITRLRIHPFIALIITSGFLGLISGMPLVKIVKSFQD 60
           M G+S++A+LL NA +AI+ LI+MITRLRIHPFIAL ITSG LGLISGMPL KIVKSFQD
Sbjct: 1   MLGMSHDATLLFNAVIAILALILMITRLRIHPFIALTITSGLLGLISGMPLPKIVKSFQD 60

Query: 61  GFGGVLGFVGIVLGLGTMLGKMMAESGGADQIAQTLVRAFGKQRVHWAMMIGAFLVGIPL 120
           GFGGVLGFVGIVLGLGTMLGK+MAESGGADQIAQTLVRAFG++RVHWAMM+GAFLVGIPL
Sbjct: 61  GFGGVLGFVGIVLGLGTMLGKLMAESGGADQIAQTLVRAFGRERVHWAMMMGAFLVGIPL 120

Query: 121 FFEIGFVLLIPLVF 134
           FFEIGFVLLIPLVF
Sbjct: 121 FFEIGFVLLIPLVF 134


>gi|300311081|ref|YP_003775173.1| high-affinity gluconate
           transporter (GNT-III system) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 450

 Score =  152 bits (384), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 103/127 (81%)

Query: 8   ASLLLNAFLAIVVLIVMITRLRIHPFIALIITSGFLGLISGMPLVKIVKSFQDGFGGVLG 67
           ++LL+ A +A++ LIV+I + +++PFI LI+ S  LGL  GMP+  IVK+F+ G G  LG
Sbjct: 7   SALLVYALVAVIALIVLIAKFKMNPFIVLIVVSLVLGLAVGMPMGNIVKAFETGVGNALG 66

Query: 68  FVGIVLGLGTMLGKMMAESGGADQIAQTLVRAFGKQRVHWAMMIGAFLVGIPLFFEIGFV 127
            + +V+GLGTMLGKMMAESGGA++IA T+++AFG++ VHWAMM  AF+VG+P+FFE+GFV
Sbjct: 67  HIALVVGLGTMLGKMMAESGGAERIANTMIKAFGEKNVHWAMMTVAFIVGLPVFFEVGFV 126

Query: 128 LLIPLVF 134
           LL+P+ F
Sbjct: 127 LLVPIAF 133


>gi|300311416|ref|YP_003775508.1| gluconate transporter family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score = 98.6 bits (244), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 78/114 (68%)

Query: 21  LIVMITRLRIHPFIALIITSGFLGLISGMPLVKIVKSFQDGFGGVLGFVGIVLGLGTMLG 80
           ++V+I+ L I PF++++I +   G+ +G+PL  I K+F  G G +LG  GI++ LG MLG
Sbjct: 27  IVVLISFLSIAPFLSILIGTFVAGIGAGLPLEDIAKAFSKGAGSLLGEAGIIIALGAMLG 86

Query: 81  KMMAESGGADQIAQTLVRAFGKQRVHWAMMIGAFLVGIPLFFEIGFVLLIPLVF 134
            +MAESG AD+I  TL+R      + W M + A +VG+PLFFE+G V++ P++F
Sbjct: 87  ALMAESGAADRIVNTLLRYARGSFIPWMMALVALVVGLPLFFEVGLVMMAPIIF 140


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.148    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 393,598
Number of extensions: 12936
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 126 (53.1 bits)