BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0031.p
         (481 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310422|ref|YP_003774514.1| gamma-glutamyltranspeptidase [H...   883   0.0  
gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase [H...   118   1e-27

>gi|300310422|ref|YP_003774514.1| gamma-glutamyltranspeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 585

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/481 (87%), Positives = 451/481 (93%)

Query: 1   MMIHDAKTGKNVALDFREMAPAKASRDMYLDDKGNVAPGRSLYTHLAVGVPGTVAGLTHA 60
           MMIHDAKTGKNVALDFREMAP +A+R+MYLDDKGNV PGRSLYTHLAVGVPGTVAGL+HA
Sbjct: 105 MMIHDAKTGKNVALDFREMAPQRATRNMYLDDKGNVVPGRSLYTHLAVGVPGTVAGLSHA 164

Query: 61  LQKYGTMKLSDVIAPAVKLAEKGYEVSPSLALILAAERDHLGQWDSSKAIFFKDGRPLQA 120
           L KYGTMKLS VI PAV+LAEKGY VS SLA IL+AER+HLGQWDSSKAIFFK+GRPLQ 
Sbjct: 165 LSKYGTMKLSQVIQPAVELAEKGYPVSRSLAQILSAEREHLGQWDSSKAIFFKEGRPLQE 224

Query: 121 GEKLVQKDLAKSLKLIGKKGPSVFYEGEIGKKIVAEMDKHNGLITAADLKNYKVVEREPV 180
           GE LVQKDLAKSL+LI K+GP  FYEG I KKIVAEMDKH GLI+A DLKNYKVVER PV
Sbjct: 225 GELLVQKDLAKSLRLIAKEGPKAFYEGSIAKKIVAEMDKHGGLISADDLKNYKVVERVPV 284

Query: 181 VGNYRGYQVMSMPPPSSGGIHIIQMMNILERYPLKQYGADSAQTIHLMAEAMKLAYADRA 240
            GNYRGYQVMSMPPPSSGG+HIIQMMNILERYPLKQYGADSAQTIHLMAE MKLAYADR+
Sbjct: 285 SGNYRGYQVMSMPPPSSGGVHIIQMMNILERYPLKQYGADSAQTIHLMAETMKLAYADRS 344

Query: 241 EYLGDPDFNKVPVKGLTSRAYADELAKKINPDRATPSAEIKPGKPQPYESDQTTHFSVAD 300
           EYLGDPDF KVPVKGLTSRAYADELAKKINPDRATPS+EIKPG+PQPYESDQTTH+SVAD
Sbjct: 345 EYLGDPDFTKVPVKGLTSRAYADELAKKINPDRATPSSEIKPGQPQPYESDQTTHYSVAD 404

Query: 301 NKGNLIATTYTLNLNFGSGIVAGGTGITLNNEMDDFSAKPGVPNAFGLVGGEANAVGPAK 360
             GNL+ATTYTLNLNFGSGIVA GTGITLNNEMDDF+AKPGVPNAFGLVGG+ANAV P K
Sbjct: 405 KDGNLVATTYTLNLNFGSGIVATGTGITLNNEMDDFAAKPGVPNAFGLVGGDANAVAPYK 464

Query: 361 RPLSSMSPTFVLKDGKPFLVTGSPGGSRIITTTMQTILNVIEHDMNVAEATVTPRVHHQW 420
           RPLSSMSPTFVLKDGKPFLVTGSPGGSRIITTT+QTILNVI+HDMNVAEAT+TPR+HHQW
Sbjct: 465 RPLSSMSPTFVLKDGKPFLVTGSPGGSRIITTTLQTILNVIDHDMNVAEATITPRIHHQW 524

Query: 421 APDQLRIEKGISADTIRILQDKGQKISVQPSMGRTQTIQIKDGMFYGYSDPRNPDGRTLG 480
           APDQLR+EKG+SADT++ILQDKGQKISVQPSMGRTQTIQI+   F G+SDPRNPDGRTLG
Sbjct: 525 APDQLRVEKGLSADTLKILQDKGQKISVQPSMGRTQTIQIRSDGFDGFSDPRNPDGRTLG 584

Query: 481 F 481
           F
Sbjct: 585 F 585


>gi|300313075|ref|YP_003777167.1| gamma-glutamyltranspeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 527

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 181/434 (41%), Gaps = 32/434 (7%)

Query: 57  LTHALQKYGTMKLSDVIAPAVKLAEKGYEVSPSLALILAAERDHLGQWDSSKAIFFKDGR 116
           L HA +    + L  ++A A+  A+ G  V+ S   +   +   L       A +  DG 
Sbjct: 117 LEHAQRFASGLPLPVLLADAIGHAQAGIPVTRSQHELTRDKWSELKDQPGFAATYAADGV 176

Query: 117 PLQAGEKLVQKDLAKSLKLIGKKGPSVFYEGEIGKKIVAEMDKHNGLITAADLKNYKVVE 176
           P Q G+ L Q  LA SL  + + G   FY G++ + + A +      +  +DL+ ++   
Sbjct: 177 PPQ-GKVLKQSALAASLSRLAEAGLDDFYRGDLAQSLAAGLQAAGSPLRRSDLEAFRAQV 235

Query: 177 REPVVGNYRGYQVMSMPPPSSGGIHIIQMMNILERYPLKQYGADSAQTIHLMAEAMKLAY 236
            +P++      +V ++PPP+  G+  + ++ + +R  + Q  AD    +H + EA K A+
Sbjct: 236 VQPLMVQLSSGRVYNLPPPTQ-GVSALMIIGLFDRLGVTQ--ADGFAHLHGLVEATKRAF 292

Query: 237 ADRAEYLGDPDFNKVPVKGLTSRAYADELAKKINPDRATPSAEIKPGKPQPYESDQTTHF 296
             R +++ DP   +V           D+  + I+  RA P        P P     T   
Sbjct: 293 ILRNQHVTDPAHMRVDAAQWLLAGALDQEVRHIDMQRAAP-------WPHPARPGDTIWM 345

Query: 297 SVADNKGNLIATTYTLNLNFGSGIVAGGTGITLNNEMDDFSAKPGVPNAFGLVGGEANAV 356
             AD +G +++   ++   FGSG+V   TGI   N    F+   GV           N +
Sbjct: 346 GAADAQGRVVSYIQSIFWEFGSGVVVPDTGIVWQNRGASFTLDEGV-----------NQL 394

Query: 357 GPAKRPLSSMSPTFVLKDGKPFLVTGSPGGSRIITTTMQTILNVIEHDMNVAEATVTPR- 415
            P K P  +++P+    D    L  G+ GG     T        +    N+  A   PR 
Sbjct: 395 QPGKLPFHTLNPSLAQLDDGRTLAFGTMGGEGQPQTQAAVFTRHVLFGQNLQAAVSAPRW 454

Query: 416 -VHHQWA--PDQLRIEKGISADTIRILQDKGQKISV----QPSMGRTQTIQIK-DGMFYG 467
            +   W      L++E  I   TI+ L+  G ++ V       MG    + +  DG+  G
Sbjct: 455 LLGRTWGDVSTNLKLEGRIPEATIQALRRAGHEVQVVDDYADMMGHAGAVCVHPDGLIEG 514

Query: 468 YSDPRNPDGRTLGF 481
            +DPR  DG   G 
Sbjct: 515 ATDPRA-DGVCAGL 527


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,596,572
Number of extensions: 69392
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 2
Length of query: 481
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 392
Effective length of database: 1,198,455
Effective search space: 469794360
Effective search space used: 469794360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)