BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0027.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310570|ref|YP_003774662.1| preprotein translocase subunit ...   565   e-162

>gi|300310570|ref|YP_003774662.1| preprotein translocase subunit
           SecF protein [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score =  565 bits (1455), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/314 (87%), Positives = 296/314 (94%)

Query: 2   MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61
           MEFFRIKKDIPFMRHALIFN ISALTFV AVFFL S+GLHFSIEFTGGTVMEVAY K A+
Sbjct: 1   MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60

Query: 62  IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121
           +E IRKS+EGLG+ DT VQSFGTAQDVMIRLPAQ GVN++QQ+EKV +ALKA DPDV+LQ
Sbjct: 61  LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQTEKVNAALKADDPDVRLQ 120

Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181
           RVEFVGPQVGDELAHDGL+ALGMVV+GIVIYLAFRFEWKFAVAAVIANLHD++IILGFFA
Sbjct: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180

Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241
           FFQWEFSLTVLAA+LAVLGYSVNESVVVFDRVREAFRDRR+GKLS PEVLNHAITST+SR
Sbjct: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTMSR 240

Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301
           T+ITHGSTEMMVL+M  FGGPTLHYFA+ALTIGILFGIYSSVFVAAA+AMWLGVKREDLI
Sbjct: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300

Query: 302 KPAKPKDETDGAVV 315
           KP K KDE  GAVV
Sbjct: 301 KPVKVKDENGGAVV 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 839,262
Number of extensions: 29943
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)