BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0019.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310362|ref|YP_003774454.1| galactonate dehydratase [Herbas...   193   2e-50

>gi|300310362|ref|YP_003774454.1| galactonate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/415 (32%), Positives = 209/415 (50%), Gaps = 46/415 (11%)

Query: 1   MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60
           MKI      +  P   F  LKIETD+G+ G G+  + GR  +V + +E+ +   LIG+D 
Sbjct: 1   MKITKITTFIVPPRWCF--LKIETDEGVVGWGEPIVEGRAHSVAAAVEE-LSDYLIGKDP 57

Query: 61  SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120
             IED W  LYRGG++R G + M+A+A +D ALWDIKGK   +PV+QLLGG  R+++ VY
Sbjct: 58  RNIEDHWTVLYRGGFYRGGAIHMSALAGIDQALWDIKGKDLGVPVHQLLGGAVRNSIRVY 117

Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180
               G   A+   A    +  G+ A+++                         G  + + 
Sbjct: 118 SWIGGDRPADTAAAAKSAVARGFTAVKMN------------------------GTEELQF 153

Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240
            D+   +  T    + VR   G +  +  D H R+    A  L K LE +KL ++E+   
Sbjct: 154 IDSHDKIELTLANVQAVREAVGPNVGIGVDFHGRVHKPMAKALIKELEPYKLMFIEEPVL 213

Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300
           +EN EA K I   T+TP+A+GE + S WD K ++    +D I+  V HAGGIT  R+IA 
Sbjct: 214 SENAEALKEIAHLTSTPIALGERLYSRWDFKRILSEGYVDIIQPDVSHAGGITETRKIAM 273

Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMR--HTPETDAVF-----PH 353
           +A  Y V    H    L P+++A+ L  +    N  IQE     H  E++ +       +
Sbjct: 274 MAEAYDVALALH--CPLGPIALASCLQVDAGSYNAFIQEQSLGIHYNESNDLLDYIRDKN 331

Query: 354 GYYFDKGYLVLPDAPGLGVDIDESAALKFPYERAYL------PTCRLRDGTVWNW 402
            + ++ GY+ +P  PGLG++I+E    ++  +RA +      P  R +DG+   W
Sbjct: 332 VFAYEDGYVKIPQGPGLGIEINE----EYVRQRAEVGHRWRNPIWRHKDGSFAEW 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,366,130
Number of extensions: 59307
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)