BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0018.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family ...    56   3e-09

>gi|300311076|ref|YP_003775168.1| sugar kinase,ribokinase family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 79/177 (44%), Gaps = 18/177 (10%)

Query: 10  GECMIELRPTHLLQPRHDAQHMPRAMAQSFSGDVYNTAVYFRRRSRQIESQFISAAGNDS 69
           GE M+E         R DA   PR   Q + GD  N         +   S ++SA G+D 
Sbjct: 9   GEAMVEF------NQRIDA---PRQFLQGYGGDTSN--FAIAAARQGAASAYLSAVGDDH 57

Query: 70  ISASLRDEVTRQGIGVSLMAAHPDALPGLYWIETNAAGERSFLYWRQQSAARHMLDEAHA 129
               L     R+ + V  +A  P    G+Y++  +AAG   F Y R  SAA        A
Sbjct: 58  FGQDLLALWQREEVDVRHVAIAPGGSTGIYFVTHDAAGHH-FHYRRAGSAASAY----QA 112

Query: 130 DAL-MQQAAHCSLLYFSGITLAILDHARRRRLLDLAQAVRAHGGWVAFDSNYRPRLW 185
            AL ++  A    L+ SGI+LAI + A    L  +A A RA G   + D+N R RLW
Sbjct: 113 KALPLEAIAAAGALHLSGISLAISESACEAGLAAMAHA-RASGVTTSLDTNLRLRLW 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,527
Number of extensions: 24610
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)