BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0015.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310560|ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribos...   587   e-169

>gi|300310560|ref|YP_003774652.1|
           S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
           (queuine synthetase)protein [Herbaspirillum seropedicae
           SmR1]
          Length = 338

 Score =  587 bits (1512), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/336 (83%), Positives = 310/336 (92%)

Query: 1   MYSLSDFDFDLPPGLIAQLPLAERSASRLLQVDGATLTDRRFADVVDLLAPGDLLVFNNT 60
           MYSLSDFDF+LPP LIAQ PLAERSASRLLQV GA LTDRRF+D+VDLL  GDLLVFN+T
Sbjct: 1   MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVDLLQAGDLLVFNDT 60

Query: 61  RVLKARFFGIKETGGKVEVLVERVLDNRSVHAQVRASKSPPPGSRIRLADAFDVTVGERY 120
           RV+KAR FG+KETGGK+E LVER+LD R+VHAQVRASKSPPPG+RIRLADAF+VTVGER+
Sbjct: 61  RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFEVTVGERF 120

Query: 121 GEFYTLQFPSDVFALLEQYGSLPLPPYIEHAADEFDETRYQTVYAKEPGAVAAPTAGLHF 180
           GEFYTL FP D FALLEQYGSLPLPPYI+H AD +DETRYQTVYAKEPGAVAAPTAGLHF
Sbjct: 121 GEFYTLHFPEDAFALLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180

Query: 181 DEALLAQLQAKGIDTAFVTLHVGAGTFQPVRVEDLSEHKMHSEWYTIAQETVDKVRAVKA 240
           D+ALL QL A+G+  AFVTLHVGAGTFQPVRVEDLS+HKMHSEWYTI  ETV+ VRA KA
Sbjct: 181 DQALLEQLAARGVQQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTIPPETVEAVRAAKA 240

Query: 241 AGGKIVAVGTTSMRALESASQAGALEAGSADTKLFITPGYTFKTVDRLITNFHLPKSTLL 300
           AG +++AVGTTSMRALES SQ+GAL+AGS DT+LFITPGYTFKTVD+L+TNFHLPKSTLL
Sbjct: 241 AGRRVIAVGTTSMRALESGSQSGALKAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300

Query: 301 MLVSAFAGYDNIRAAYAHAIAQQYRFFSYGDAMLLT 336
           MLVSAFAGY+ IRAAYAHAIAQ+YRFFSYGDAMLLT
Sbjct: 301 MLVSAFAGYELIRAAYAHAIAQKYRFFSYGDAMLLT 336


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,032,118
Number of extensions: 40918
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)