BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0007.p
         (200 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...   330   6e-92
gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...   318   2e-88

>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  330 bits (845), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 151/195 (77%), Positives = 174/195 (89%)

Query: 6   EQFASHVYHDRNFNCDTAKILPGEYYHTHHDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65
           E FAS+VYHDR F+C TAKILPGEY++T  DMMIVTVLGSCVSAC+RDRVSG+GGMNHFM
Sbjct: 9   ENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 68

Query: 66  LPDGGNDADSPISSSMRYGTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFNAINVG 125
           LPDGG +ADSP+S+SMRYGTYAME+LIN++LK+GA+RENLE KVFGGGAVLRG NA+NVG
Sbjct: 69  LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 128

Query: 126 ERNAAFVRTYLRTEGIRVVAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDAATEMKERDYA 185
           ERNAAFVR++L  E IRVVAEDLNDIWPRKVH+FPR+GKVLVKK+K   A    +ER+YA
Sbjct: 129 ERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGADLTSREREYA 188

Query: 186 GKLAKKPVGGEIDLF 200
            +L  KPVGGEIDLF
Sbjct: 189 SRLQAKPVGGEIDLF 203


>gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score =  318 bits (815), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 173/201 (86%), Gaps = 1/201 (0%)

Query: 1   MSQNIEQFASHVYHDRNFNCDTAKILPGEYYHTHHDMMIVTVLGSCVSACIRDRVSGIGG 60
           MSQ  EQ AS++Y+DR F+CD AKILPGEYY T  DMMIVTVLGSCVSACIRDRVSGIGG
Sbjct: 1   MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60

Query: 61  MNHFMLPDGGNDADSPISSSMRYGTYAMEILINEILKSGAKRENLESKVFGGGAVLRGFN 120
           MNHFMLPDGG D  SP+S+S RYGTYAME+LIN++LKSGA+RENLE+KVFGGG VLRGF+
Sbjct: 61  MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120

Query: 121 AINVGERNAAFVRTYLRTEGIRVVAEDLNDIWPRKVHYFPRSGKVLVKKLKSTDAATEM- 179
           AINVGERNA FVR YL+ E IRVVAEDLNDI+PRKV++FPR+GKVLVKKLK     T + 
Sbjct: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180

Query: 180 KERDYAGKLAKKPVGGEIDLF 200
           +E+ YA KL  KPVGGE+DLF
Sbjct: 181 REKAYASKLVTKPVGGEVDLF 201


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 605,375
Number of extensions: 23016
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,236,335
Effective search space: 147123865
Effective search space used: 147123865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)