BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0005.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311138|ref|YP_003775230.1| translation initiation inhibito...   110   4e-26

>gi|300311138|ref|YP_003775230.1| translation initiation inhibitor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  110 bits (276), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 94/150 (62%), Gaps = 3/150 (2%)

Query: 1   MNLDQRLTELGIVLPASAAPGAQYATGVVHQGLAWISGQLPRDGDRVLVSGKLGREVSIE 60
           M++ ++L  L I LPA A P A Y          ++SG L +   +V V G+LGR++  +
Sbjct: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKDGKVWV-GQLGRDIGTD 59

Query: 61  DARMGARAALIRALAALRDTVG-DLQRIDKILRLNVYVNSTEDFSQQSAVADGASALIYE 119
           DA++ ARA  +  +A L+   G DL R+ +I++L   VNST +F++   V +GAS LI E
Sbjct: 60  DAKLAARAVAVDLIATLQAACGGDLTRVKRIVKLMSLVNSTGEFTEHHLVTNGASELIGE 119

Query: 120 LFGPEQGRHARTSVGVAQLPRNAAVELDIV 149
           +FG E G+HAR++ GVAQLP  A VE++++
Sbjct: 120 VFG-EAGKHARSAFGVAQLPMGACVEIEMI 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 469,187
Number of extensions: 17540
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)