BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0004.p (356 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 566 e-162 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 363 e-102 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 357 e-100 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 333 9e-93 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 327 9e-91 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 566 bits (1458), Expect = e-162, Method: Compositional matrix adjust. Identities = 285/363 (78%), Positives = 309/363 (85%), Gaps = 8/363 (2%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA IHLKQV+KTYG KAVDVIHGID +IADGEFIVMVGPSGCGKSTLLRMVAGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 SG I+IGDRVVN+LEPKERDIAMVFQNYALYPHM+VY+NMAYGLKIQGL K+EID RVQR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILELGALL+RTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMN+G AEQIGTPAEVY +PATTFVASFIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 241 PPMNLLNGKLGDDGARFTFDDGSVFD-LSTPAKIGGGA---RILGIRPEHLQLGRPG--- 293 PPMNLL GKL DGA F G+ D L P + G A RILG+RPEHL G Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 294 -LNMEVELVEALGAELLVHTRCGGQSMVIRCAAGTEVAMGQQVTAGVDANLLHWFDPQTT 352 L++EVELVEALGAELLVH RCGGQ++V+RC A +V GQ++ A A +HWFD ++T Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 353 HRI 355 RI Sbjct: 361 RRI 363 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 363 bits (933), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/358 (53%), Positives = 246/358 (68%), Gaps = 11/358 (3%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA + ++ VKK +G + +I G+DIDIADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MASVQIRAVKKQFG----STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 G+I+IG VVNN++PK+RDIAMVFQNYALYPHM+V +NMA+ L + KA +D RV++ Sbjct: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+IL L LLDR PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G EQ G P ++Y PA FVA FIGS Sbjct: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGS 236 Query: 241 PPMNLLNGKLGDD--GARFTFDDGSVFDLSTPAKIGG--GARI-LGIRPEHLQLGRP--G 293 P MN + L + GA F DG+ A + G G ++ G+RPEHL +G G Sbjct: 237 PAMNFIPATLRRNATGAEVEFADGTRVPAPYGAALQGNDGQKVTYGVRPEHLSIGAAGQG 296 Query: 294 LNMEVELVEALGAELLVHTRCGGQSMVIRCAAGTEVAMGQQVTAGVDANLLHWFDPQT 351 + +V +VE GA+ V +R G S+ + G + D + H FD ++ Sbjct: 297 IATKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAES 354 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 357 bits (916), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/361 (54%), Positives = 250/361 (69%), Gaps = 16/361 (4%) Query: 1 MAKIHLKQVKKTY-GKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEI 59 MA +++KQ++KTY G+A DV+ G+++DI DGEF V+VGPSGCGKSTLLRM+ GLEEI Sbjct: 1 MAHVNIKQLRKTYDGRA----DVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEI 56 Query: 60 SSGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQ 119 S G++ IG +VVN+L P ER IAMVFQ+YALYPHM+VY+NMA+GLK+ G K++ID R++ Sbjct: 57 SGGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIR 116 Query: 120 RAAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLE 179 AA IL++ LL R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLE Sbjct: 117 HAAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLE 176 Query: 180 IQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIG 239 I KLH L T +YVTHDQVEAMTLG +++VM++GR +Q GTP E+Y +P FVA FIG Sbjct: 177 IAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIG 236 Query: 240 SPPMNLLNG---KLGDDGARFTFDDG--SVFDLSTPAKIGGGARILGIRPEHLQL----G 290 SP MN G + D G + G + D+ G A LG+R E ++ G Sbjct: 237 SPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDG 296 Query: 291 RPGLNMEVELVEALG-AELLVHTRCGGQSMVIRCAAGTEVAMGQQVTAGVDANLLHWFDP 349 +P L+ V LVE LG A L T GG +V+R V +GQ + V ++ H FD Sbjct: 297 QP-LHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDA 355 Query: 350 Q 350 Q Sbjct: 356 Q 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 333 bits (855), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 177/363 (48%), Positives = 234/363 (64%), Gaps = 27/363 (7%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA + ++ + K Y +V+ I+++I DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 GD+ IG R +N + +R +AMVFQ+YALYPHMS+Y+NMA+GLKI G KAEID VQ Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+IL + LLDR PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 KLH L+TT +YVTHDQ+EAMTL +++V+++GR EQ+G+P ++Y PA FVA FIGS Sbjct: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 Query: 241 PPMNLLNG------------KLGDDGARFTFDDGSVFDLSTPAKIGGGARILGIRPEHLQ 288 P MN ++G +L G ++ DGS + G LG+RPEHL Sbjct: 237 PKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQV-------GQKVTLGVRPEHLN 289 Query: 289 L--GRPGLNMEVELVEALGAELLVHTRCGGQ--SMVIRCAAGTEVAMGQQVTAGVDANLL 344 + G+ L +E LG ++ G ++++R + G + D Sbjct: 290 IAQGQAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARC 349 Query: 345 HWF 347 H F Sbjct: 350 HLF 352 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 327 bits (838), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 174/365 (47%), Positives = 239/365 (65%), Gaps = 20/365 (5%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA I L+ +K YG AP VI +D+DI + EF V +GPSGCGKSTLLR +AGLE+++ Sbjct: 1 MASITLRAAQKAYGDAPP---VIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLT 57 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 SGD+ IG + VN++ +R +AMVFQ+YAL+PHM+VYENM++GL + LPKAEI+ +V+ Sbjct: 58 SGDLFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVRE 117 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA IL+L LL R P++LSGGQRQRVA+GRAIVR+P VFLFDEPLSNLDA LR Q R+EI Sbjct: 118 AARILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEI 177 Query: 181 QKLHASLRTTS-LYVTHDQVEAMTLGQRMIVMNK-------GRAEQIGTPAEVYGKPATT 232 +LH S +YVTHDQVEAMTL R+++++ G Q+GTP E+Y P Sbjct: 178 ARLHRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNR 237 Query: 233 FVASFIGSPPMNLLNGKLG---DDG--ARFTFDDGSVFDLSTPAKIGGGARILGIRPEHL 287 FVA FIGSP MN L ++ ++G R + + ++ + A G +G+RPEH+ Sbjct: 238 FVAGFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHM 297 Query: 288 QL---GRPGLNMEVELVEALGAELLVH-TRCGGQSMVIRCAAGTEVAMGQQVTAGVDANL 343 ++ G+ G++ EV LVE LG + VH GQ +V + A + G++V + Sbjct: 298 EIGSQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPAC 357 Query: 344 LHWFD 348 + FD Sbjct: 358 AYLFD 362 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,093,987 Number of extensions: 45515 Number of successful extensions: 551 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 355 Number of HSP's successfully gapped: 141 Length of query: 356 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 270 Effective length of database: 1,212,660 Effective search space: 327418200 Effective search space used: 327418200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)