BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0753.p (154 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogena... 222 1e-59 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 67 6e-13 gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein... 60 6e-11 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 59 1e-10 gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein... 58 3e-10 >gi|300313636|ref|YP_003777728.1| short-chain alcohol dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 268 Score = 222 bits (565), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 109/134 (81%), Positives = 120/134 (89%), Gaps = 2/134 (1%) Query: 1 VVIANAGISQGTLTEFAEDIPVFERIIATNVTATVATFHPFIAAMKTQP--RRQDCRLVG 58 VVIANAGISQGTLTEF ED+ FERI+A NVTAT ATF PF+A MK P +R+ CRLVG Sbjct: 89 VVIANAGISQGTLTEFQEDLAAFERILAVNVTATFATFTPFVARMKASPEAQRRRCRLVG 148 Query: 59 IGSVAGIRGLPGAEAYSASKAAVISYCESLRIELRASGIKVVTIAPGYIDTPMTQINHYR 118 IGSVAGIRGLPGA AYSASK+AVISYCESLR+ELRASGIKVVTIAPGYIDTPMT++N YR Sbjct: 149 IGSVAGIRGLPGAGAYSASKSAVISYCESLRVELRASGIKVVTIAPGYIDTPMTRVNTYR 208 Query: 119 MPFLMPVQKFAARA 132 MPFLMPV++FAARA Sbjct: 209 MPFLMPVERFAARA 222 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 67.0 bits (162), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 21/139 (15%) Query: 1 VVIANAGISQGTLTEFAEDIPVFERIIATNVTAT---VATFHPFIAAMKTQPRRQDCRLV 57 V++ NAG+++ T D P+ + NV T +A H A + ++Q R+V Sbjct: 88 VLVNNAGVAR---TYSFLDYPLENWLQTMNVNVTGVLLAGQH----AARLMVKQQWGRIV 140 Query: 58 GIGSVAGIRGLPGAEAYSASKAAVISYCESLRIELRASGIKVVTIAPGYIDTPMTQINH- 116 I S++GIR G AY SKAAVI + IEL GI V ++APG +DTPMTQ H Sbjct: 141 NISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITVNSVAPGPVDTPMTQAMHS 200 Query: 117 -------YRMPFLMPVQKF 128 YR L+P++++ Sbjct: 201 EQTRESYYR---LVPMRRY 216 >gi|300310391|ref|YP_003774483.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 283 Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 24 ERIIATNVTATVATFHPFIAAMKTQPRRQDCRLVGIGSVAGIRGLPGAEAYSASKAAVIS 83 E I TN+ + + AA+ R + + SVAG GLPGA Y KAA+I+ Sbjct: 136 EHTIRTNLASVYSALG---AALPDMLARGSGGIALVASVAGYVGLPGATVYGPGKAALIN 192 Query: 84 YCESLRIELRASGIKVVTIAPGYIDTPMTQINHYRMPFLMPVQKFAA 130 E L +LR G+ V + PG++ T +T N + MP L Q+ A+ Sbjct: 193 LAEILYSDLRPKGVNVYLVNPGFVKTDLTDKNDFTMPALQTPQQAAS 239 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 4/113 (3%) Query: 1 VVIANAGISQGTLTEFAEDIPVFERIIATNVTATVATFHPFIAAMKTQPRRQDCRLVGIG 60 +++ NAGI+Q L +D ++ +IATN+TA + M + + R++ I Sbjct: 89 ILVNNAGITQDQLAMRMKD-EEWDSVIATNLTAVGRLSRAVLRGMM---KARTGRIINIT 144 Query: 61 SVAGIRGLPGAEAYSASKAAVISYCESLRIELRASGIKVVTIAPGYIDTPMTQ 113 SV G G PG Y+A+KA V +L E+ + I V +APG+IDT MT+ Sbjct: 145 SVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDMTR 197 >gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 3/110 (2%) Query: 2 VIANAGISQGTLTEFAEDIPVFERIIATNVTATVATFHPFIAAMKTQPRRQDCRLVGIGS 61 +I NAG + T+ D+ + RI+ N+ AM+ R R+V I S Sbjct: 82 LINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHACRSVTPAMRAARRG---RIVNIAS 138 Query: 62 VAGIRGLPGAEAYSASKAAVISYCESLRIELRASGIKVVTIAPGYIDTPM 111 +AG G P A AYSA+KA V++ +SL EL SG+ V IAP + T + Sbjct: 139 LAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVNAIAPAAVKTAL 188 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 428,992 Number of extensions: 14454 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 9 Length of query: 154 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 77 Effective length of database: 1,255,275 Effective search space: 96656175 Effective search space used: 96656175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)