BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0749.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...    89   4e-19
gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoa...    56   2e-09

>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 88.6 bits (218), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 88/176 (50%), Gaps = 1/176 (0%)

Query: 31  ALLVIDFQNEYFSGKMPIPDGMAALNNAKRLIAFADRHNMPVFHVQHVTPSGTPIFAVDG 90
           AL++ID Q EY +G+ P+    AA+     L+  A     PV HV H    G  +F   G
Sbjct: 24  ALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMFDPQG 83

Query: 91  DTVAIHQDIQPAAHHRVVQKSSVSVFPTTDIDAQLKAASVKTLIISGLMTHACVAGAARD 150
             VAI   +QP     V+ K   + F  T +D  LK    K+LII+G  TH CV+   R 
Sbjct: 84  PHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSATVRS 143

Query: 151 AVPAGYEVIVAADASATRDLDAP-GGGVITHDVLHRGALTTIADTFGDVLDTSAIL 205
           A+  GY   V A A ATRDL  P GG  ++   + R AL  +AD +  V+  + +L
Sbjct: 144 ALDHGYACTVVAAACATRDLPDPLGGPALSAAEIQRVALAELADRYATVVAHAGLL 199


>gi|300313872|ref|YP_003777964.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 30  TALLVIDFQNEYFSGKMPIPDGMAALNNAKRLIAFADRHNMPVFHVQHVTPSGTPIFAVD 89
           TALL+ID Q+    G   + +  A ++   +L   A     PV  VQH         +  
Sbjct: 3   TALLIIDIQHALCHGPDAVENSAAVIDRVNQLADQARAAGAPVIFVQHEDEDALQRGSEG 62

Query: 90  GDTV-AIHQDIQPAAHHRVVQKSSVSVFPTTDIDAQLKAASVKTLIISGLMTHACVAGAA 148
              +  +HQ  QP   H  + K     F  T++ A LK   +  L+I G+ T  CV    
Sbjct: 63  WQLMPGLHQ--QPEDLH--LPKRGSDAFHHTELQAMLKMRHISALVICGMQTEYCVESTV 118

Query: 149 RDAVPAGYEVIVAADASATRDLDAPGG 175
           R A+  GY V++AADA  T    AP G
Sbjct: 119 RRALALGYPVMLAADAHTT----APNG 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 683,145
Number of extensions: 28934
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)