BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0746.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter prot...   302   3e-83

>gi|300313629|ref|YP_003777721.1| oxalate/formate antiporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 416

 Score =  302 bits (773), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 175/248 (70%), Positives = 203/248 (81%), Gaps = 5/248 (2%)

Query: 26  DSSYAVVRLLITLVLMVIGASGMYVVAVVLPAVQAEFGVARGVASMPYTLSMIGFGIGGM 85
           DS YAV+RL IT+VLMV+GASGMYV+AVVLP VQA + V RG+ASMPYTL+M+G G+GG+
Sbjct: 18  DSPYAVMRLCITMVLMVVGASGMYVIAVVLPYVQAHYYVDRGLASMPYTLTMLGVGVGGL 77

Query: 86  LMGKLADRFGVMIPLLVGAVCLGLGFILAGMAPNIIVFTLAHGLLIGLCGSSATFSPLIA 145
           LMG++ADR G+  PL +G +CLG GFI A  AP+I  F   H L IGL G+SATFSPL+A
Sbjct: 78  LMGRMADRAGITRPLFLGGLCLGGGFIAASYAPDIWTFMAVHCLFIGLLGTSATFSPLVA 137

Query: 146 DTSLWFVRRRGIAVAVCASGNYLGGAIWPPIVQHFVDTVGWRQTYFGLGVVCFIVMGGLA 205
           DTSLWF +RRGIAVAVCASGNYLGGAIWPPIVQHFVD+VGW+QTY G+G+ C ++M  LA
Sbjct: 138 DTSLWFRKRRGIAVAVCASGNYLGGAIWPPIVQHFVDSVGWQQTYIGMGIACSLIMCSLA 197

Query: 206 LLMRRRPPV--AVAAAARNGVSLTSERPFGLPMGKAQLLLCVAGIACCVAMAMPQVHIVA 263
           LLMR RPP   + AA+AR G      RPFGL  G AQLLLCVAG+ACCVAMAMPQVHIVA
Sbjct: 198 LLMRARPPAQDSSAASARPG---GGPRPFGLAPGSAQLLLCVAGVACCVAMAMPQVHIVA 254

Query: 264 YCGDLGYG 271
           YCGDLGYG
Sbjct: 255 YCGDLGYG 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.144    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 906,605
Number of extensions: 37006
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)