BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0742.p
         (516 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313626|ref|YP_003777718.1| sporulation protein [Herbaspiri...   986   0.0  

>gi|300313626|ref|YP_003777718.1| sporulation protein
           [Herbaspirillum seropedicae SmR1]
          Length = 509

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/504 (91%), Positives = 487/504 (96%)

Query: 13  RRDPLPCPSDWSFELIERYNEEIAKVAASYKLDIYPIQLEIISAEQMMDAYASSGMPVNY 72
           + DPLPCPSDWSFELIERYNEEIA+VA  Y+LDIYPIQLEIISAEQMMDAYAS GMPVNY
Sbjct: 6   KHDPLPCPSDWSFELIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHGMPVNY 65

Query: 73  RHWSFGKHFLATERDYKRGQMGLAYEIVINSNPCIAYLMEENTMTMQALVVAHAAYGHNS 132
           RHWS+GKHF+ TERDYKRGQMGLAYEIVINS+PCIAYLMEENTMTMQALV+AHAAYGHNS
Sbjct: 66  RHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAAYGHNS 125

Query: 133 FFKGNYLFQLWTDASAIIDYLVYAKGYIAECEERYGFDRVEELLDSCHALMNYGVDRYKR 192
           FFKGNYLFQLWTDASAIIDYLVYA+ YIAECEER+GF+RVEELLDSCHALMNYGVDRYKR
Sbjct: 126 FFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGVDRYKR 185

Query: 193 PQRMSLAQERAQQREREAYAQSQVNELWRTLPAKKETTAAQVDERFPSEPQENLLYFAEK 252
           PQR+SLAQE+A+QREREAY QSQVNELWRTLPAKKE TAA V+ RFPSEPQENLLYFAEK
Sbjct: 186 PQRLSLAQEKARQREREAYMQSQVNELWRTLPAKKEMTAAAVEGRFPSEPQENLLYFAEK 245

Query: 253 NAPLLESWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTMYDQGKLTDSFMM 312
           NAPLLE WEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNT+YDQG+LTD FMM
Sbjct: 246 NAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLTDGFMM 305

Query: 313 EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTAEDKQWFPDMAGSNWL 372
           EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPT ED++WFPD+AG NWL
Sbjct: 306 EFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTDEDREWFPDIAGRNWL 365

Query: 373 DTLHYVMRNFKDESFVAQYLSPKLMRDMRMFAVLDDESRSELEVSAIHNDSGYQYVRQAL 432
           DTL YVMRN+KDESF+AQYLSPKLMRDMRMFAVLDDESRSE+EVSAIHN+ G+QYVRQAL
Sbjct: 366 DTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDESRSEIEVSAIHNERGFQYVRQAL 425

Query: 433 SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE 492
           SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE
Sbjct: 426 SRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQFDVYLE 485

Query: 493 SVDDNGYIVQRYECISDNRYVLRS 516
           SVDDNGYIVQRYEC+++NRY LRS
Sbjct: 486 SVDDNGYIVQRYECVAENRYALRS 509


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,478,601
Number of extensions: 57017
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 427
Effective length of database: 1,198,455
Effective search space: 511740285
Effective search space used: 511740285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)