BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0741.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313625|ref|YP_003777717.1| hypothetical protein Hsero_4341...   707   0.0  

>gi|300313625|ref|YP_003777717.1| hypothetical protein Hsero_4341
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/422 (81%), Positives = 377/422 (89%), Gaps = 1/422 (0%)

Query: 3   LLHQIIDRRLAGKNKSIANRERFLRRFRSDIRRSVTEAVRDRSIKDIESSKSITIPRKDI 62
           +LHQIIDRRLAGKNKSIANRERFLRRF+  I+RSV +AVRDRSI D+E SKSI+IPRKD+
Sbjct: 1   MLHQIIDRRLAGKNKSIANRERFLRRFKGHIQRSVADAVRDRSITDLEKSKSISIPRKDV 60

Query: 63  SEPAFHHGRGGKREIVHPGNQDYLQGDRIPRRSGGSGDGGST-ASNEGESQDEFTFELSR 121
           SEP FHHG+GGKRE VHPGNQDYLQGDRIPR++GGSG GG + ASN+GE QD+FTFEL+R
Sbjct: 61  SEPFFHHGKGGKREAVHPGNQDYLQGDRIPRQNGGSGGGGGSSASNDGEGQDDFTFELTR 120

Query: 122 EEFMQYFFEDLELPRLIQTNLMSIPNWKNMRAGYSVDGSPANIDIVRSLRSSLGRRIALG 181
           EEFM YFFEDLELPRL++TNL+ +PNWKN RAGYSVDGSP NID+VRSLRSSLGRRIALG
Sbjct: 121 EEFMHYFFEDLELPRLVETNLLQVPNWKNQRAGYSVDGSPNNIDVVRSLRSSLGRRIALG 180

Query: 182 GPLVAKLRELEEQLCALQNDPGDRRSEILLLEEEIHHLKGRIWRIPFIDPFDLRYVNRVR 241
           GPL  +L   EE L  ++  P + R++I LLEEEI  L+ RI RIPFIDPFDLRYVNRVR
Sbjct: 181 GPLQRQLDAAEEALTEMKRKPDEHRADIKLLEEEIRQLRARILRIPFIDPFDLRYVNRVR 240

Query: 242 QPQPSSRAVMFCVMDVSGSMDEQRKDLSKRFFILLYLFLMRNYEHIEVVFIRHHTRADEV 301
           QPQPSSRAVMFCVMDVSGSMDEQRKDLSKRFFILLYLFL RNYEHIEVVFIRHHTRADEV
Sbjct: 241 QPQPSSRAVMFCVMDVSGSMDEQRKDLSKRFFILLYLFLTRNYEHIEVVFIRHHTRADEV 300

Query: 302 DEETFFHSQESGGTVVSSALELMQDIIRTRYPSNEWNIYGAQASDGDNWNDDSPKCRSIL 361
           DE TFFHSQESGGTVVSSALELM DII  RY  +EWNIYGAQASDGDNWNDDSPKCR +L
Sbjct: 301 DENTFFHSQESGGTVVSSALELMHDIITKRYSPSEWNIYGAQASDGDNWNDDSPKCRELL 360

Query: 362 EEAILPMCRYFAYIQVAEPEQNLWTEYTQLLHEHPHFAMKKVQSSSEIYPVFRELFEKQV 421
           E AILP+ RYFAYIQVAEPEQNLWTEY QL+  HPHFAMKKVQS++EIYPVFRELFEKQV
Sbjct: 361 ESAILPLTRYFAYIQVAEPEQNLWTEYMQLIESHPHFAMKKVQSAAEIYPVFRELFEKQV 420

Query: 422 HA 423
           HA
Sbjct: 421 HA 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,144,979
Number of extensions: 40739
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)