BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0728.p
         (474 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA poly...   555   e-159

>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA
           polymerase involved in DNA repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  555 bits (1430), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/381 (71%), Positives = 314/381 (82%)

Query: 93  ANARRIAHLDMDAFYASVELLRYPELRGRAVVIGGRSVHQPVTRADGTREFSILRDYVGR 152
           AN RRIAHLDMDAFYASVELLRYP+LRG+AVVIGG S  +PV   DGTR++  +RDY GR
Sbjct: 2   ANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGR 61

Query: 153 GVITTSTYEARALGVFSAMGMMKAAQLAPDAVLLPVDFDSYRHYSRLFKKAVAGIAPLIE 212
           GV+TTSTYEARALGVFSAMG+MKAAQLAPDA+LLP DF++YR YSRLFK+AV  IAPLIE
Sbjct: 62  GVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLIE 121

Query: 213 DRGIDEIYIDLSEHQEETRALATRIKNAVNETTGLSCSIGVAPNKLLAKICSDLEKPNGL 272
           DRGIDEIYIDLS   +    +A +IK+AV+  T L+CSIGVAPNK+LAKI S+L+KPNGL
Sbjct: 122 DRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGL 181

Query: 273 TILTMADVPTRIWPLPARKINGIGPKAAEKLTALGIVTIGDLARTDAGVLQDHFGRSYSA 332
           TILT AD+  RIWPLP RKINGIGPKAAEKL+ALGI T+ DLA     +L+ HFGRSY+ 
Sbjct: 182 TILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSYAE 241

Query: 333 WLGNVAQGVDDRPVSTSSEPKSISRETTFERDLHARHDRDKLSGIFTALCTRVSEDLHRK 392
           WLG VAQGVDDRPV T SEPKSISRETTFERDLHAR DR +LS IFTALC +++ DL RK
Sbjct: 242 WLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDRK 301

Query: 393 GYLGRTIGIKLRYADFSTVTRDVTLPASVNDPAAIRRAAGECLRRVPLEQRIRLLGVRVG 452
           GY+GRTIGIKL+YADF  VTRDVTLP+   D AAIR+AAGECL+RVPL++++RLLGVRVG
Sbjct: 302 GYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRVG 361

Query: 453 ALSKNDGTPEREDFSQGEFGF 473
           ALSK D         Q E  F
Sbjct: 362 ALSKKDEQAAASHAVQAELPF 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,479,495
Number of extensions: 63412
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,198,455
Effective search space: 461405175
Effective search space used: 461405175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)