BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0726.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase [He...   215   2e-57

>gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  215 bits (547), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 119/153 (77%)

Query: 1   LLKDFTPEDLRAWIHGLGIDTFVGSSGRVFPTDMKAAPLLRAWLHRLREAGVRFHMRHRW 60
            ++ F  + LRAWIH LGI+TFVGSSGRVFP +MKAAPLLRAWLHRLREAGVR HMRHRW
Sbjct: 83  FVRRFDADRLRAWIHDLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRLHMRHRW 142

Query: 61  QGWDADGKLRFATPEGEISVAASTVILALGGGSWARLGSDGAWMPLLAERGVGLAPLQPS 120
            GW  DG LR A P+GE SV A  V+LALGG SW RLGSDG+W+PLL  R V +APL P+
Sbjct: 143 LGWQQDGTLRLAHPDGETSVRADAVVLALGGASWPRLGSDGSWVPLLQARQVEVAPLLPA 202

Query: 121 NCGFDVDWSAHFRSRAAGEPLKTIAATVMLNDG 153
           NCGF++DWS HFR R AG P+K + A+V L  G
Sbjct: 203 NCGFELDWSEHFRERFAGAPVKPVVASVALPSG 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 703,066
Number of extensions: 31183
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)