BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0725.p (265 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313611|ref|YP_003777703.1| amino acid ABC transporter perm... 419 e-118 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 313 1e-86 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 129 2e-31 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 125 3e-30 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 119 2e-28 >gi|300313611|ref|YP_003777703.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 247 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 201/247 (81%), Positives = 228/247 (92%) Query: 19 MDFRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVT 78 MDFRWSII+GYAPLF KG MTL+V++ISI+ GTV+GLL+GMLRLA+VQHG WK+ L+ Sbjct: 1 MDFRWSIIQGYAPLFAKGVLMTLQVSLISILIGTVIGLLVGMLRLAEVQHGPWKWPLKSM 60 Query: 79 KWIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIV 138 +W+A FYVAFFRGTPLFVQI+LIHFAVMPVL+ Q++GLLI+GELARTIKQDYGAF+SG V Sbjct: 61 RWLAGFYVAFFRGTPLFVQIMLIHFAVMPVLVQQEHGLLITGELARTIKQDYGAFLSGTV 120 Query: 139 ALSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEA 198 ALSLNA AYISEIFRAGIQSI+RGQSYAA+SLGM Y L MRY++LPQAFRRMLPPLGNEA Sbjct: 121 ALSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEA 180 Query: 199 ITLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKK 258 ITLLKDSSLVS IGLAELAYAARTVAG+Y+RYWEPYITISV+YFSMTICLA++VARLE K Sbjct: 181 ITLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALVVARLESK 240 Query: 259 YSAPSRH 265 YSAP R Sbjct: 241 YSAPHRR 247 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 313 bits (802), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 150/240 (62%), Positives = 193/240 (80%), Gaps = 1/240 (0%) Query: 21 FRWSIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLL-RVTK 79 F+W II Y PLF++G +MTL+ A+I ++AGT GL+LG+ RLA+ +HG WKY L + Sbjct: 5 FQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 Query: 80 WIASFYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIVA 139 W FYV+F RGTPLFVQILLIHFA+MP+LI+ GL++SG+LAR I+ YGAF S ++A Sbjct: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLA 124 Query: 140 LSLNAAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEAI 199 ++LN+ AY+SEIFRAGIQSIDRGQS A+ SLGM Y +R ++LPQAFRRMLPPLGN AI Sbjct: 125 ITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNNAI 184 Query: 200 TLLKDSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKKY 259 ++KDSSL S IGLAELAYAARTV+G+Y+RYWEPY+TISV+Y+ +T+ L+ LV LE +Y Sbjct: 185 AIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEARY 244 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 27/235 (11%) Query: 24 SIIEGYAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVTKWIAS 83 +++ AP KG TL A+ S++ G V+G +L + R+ W R W A+ Sbjct: 7 ELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVP-----W----RPIHWPAA 57 Query: 84 FYVAFFRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIVALSLN 143 YV+ RGTPL VQI ++++ + G+ I ++ +G++ LSLN Sbjct: 58 IYVSMMRGTPLLVQIFVVYYGL--------PGMGI----------EFSPLTAGVLTLSLN 99 Query: 144 AAAYISEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEAITLLK 203 A+AY+SE R I + RGQ AA S+G+ Y +RYII+PQA R +P + N I+L+K Sbjct: 100 ASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIK 159 Query: 204 DSSLVSTIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKK 258 D+SLVS I + EL A + V R Y+ + +Y+ +++C L RLEKK Sbjct: 160 DTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAAAIYWMLSLCFEALQHRLEKK 214 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 125 bits (315), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 133/232 (57%), Gaps = 27/232 (11%) Query: 29 YAPLFIKGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVTKWIASFYVAF 88 + P+ +KG +T+EV + S + +V+GLLL +++++ L+ + V Sbjct: 9 FLPILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSR---------LKPVALAGATIVNI 59 Query: 89 FRGTPLFVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIVALSLNAAAYI 148 RG P+ VQ+ I+F V+P D G+ +S AF +G+V L + +AY Sbjct: 60 IRGLPIIVQLFYIYF-VLP-----DIGIQLS------------AFQAGVVGLGIAYSAYQ 101 Query: 149 SEIFRAGIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEAITLLKDSSLV 208 +E FRAGI+++D GQ AA S+GM L MR ++LPQAFR LPP GN + +LKDSSLV Sbjct: 102 AENFRAGIEAVDMGQIEAAQSIGMRGPLIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLV 161 Query: 209 STIGLAELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKKYS 260 STI + E+ A + +A S + Y T++V+Y +++ L L+ RLE + S Sbjct: 162 STITVLEMTRAGQMIASSTFQNMTVYTTVAVLYLLLSLPLVFLIRRLEIRNS 213 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 19/224 (8%) Query: 35 KGFFMTLEVAVISIVAGTVMGLLLGMLRLADVQHGVWKYLLRVTKWIASFYVAFFRGTPL 94 G ++L++ +++IV G V G LL M+RL+ +H +W A+ YV FR PL Sbjct: 20 DGLLVSLKITLVAIVFGMVWGTLLAMMRLS--RHSP-------LQWFAAGYVNLFRSIPL 70 Query: 95 FVQILLIHFAVMPVLIHQDNGLLISGELARTIKQDYGAFVSGIVALSLNAAAYISEIFRA 154 V +LL F ++P L+ + GL + +L T S +VA +L AAY +EI RA Sbjct: 71 -VMVLLWFFLIVPQLLQKLFGLSPANDLRMT---------SALVAFALFEAAYYAEIIRA 120 Query: 155 GIQSIDRGQSYAASSLGMGYRLRMRYIILPQAFRRMLPPLGNEAITLLKDSSLVSTIGLA 214 GI S+ RGQ AA +LG+ Y M +ILPQAFR M+P L + I L +D+SLV LA Sbjct: 121 GINSVSRGQMAAAYALGLTYPQAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYVSALA 180 Query: 215 ELAYAARTVAGSYSRYWEPYITISVVYFSMTICLAMLVARLEKK 258 + A ++ R E VYF + ++++V R KK Sbjct: 181 DFFGRAYSIGERNGRIIEMLFVAGAVYFIICFSMSLMVKRYRKK 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 785,433 Number of extensions: 31369 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 19 Length of query: 265 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 181 Effective length of database: 1,222,130 Effective search space: 221205530 Effective search space used: 221205530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)