BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0721.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313604|ref|YP_003777696.1| hypothetical protein Hsero_4319...   228   1e-61

>gi|300313604|ref|YP_003777696.1| hypothetical protein Hsero_4319
           [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  228 bits (582), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/157 (71%), Positives = 129/157 (82%), Gaps = 1/157 (0%)

Query: 1   MKFNHLIQINDPLNPLIDNLTREQLWRGLVMRAEAPQLFMEHLDECVLSDKTDAAVKRML 60
           MKFNHLIQINDPLNPLID+LTREQLWRGLVMRAE+P LFM HLD+C LS+K+  +V+R L
Sbjct: 1   MKFNHLIQINDPLNPLIDSLTREQLWRGLVMRAESPGLFMPHLDDCRLSEKSLDSVRREL 60

Query: 61  RYGELRIHDVVTYEALQRVHYHVPVQGEIPTSSLSMTIEEPEEEALFVRFEYDDGTPEEE 120
           RYGEL I D VTY    +V Y VP QGEIP S +SMTIEEP+ E LFVRFEYDDG PE+ 
Sbjct: 61  RYGELVIIDKVTYLPQIQVLYEVPAQGEIPPSRMSMTIEEPQAEVLFVRFEYDDGQPEDV 120

Query: 121 AGTEKAFYDQFRRSAYEEADIDTIRIIRELIVKGSVH 157
            G E+AFYD FRRSAY+EADIDT+RIIREL  +G +H
Sbjct: 121 TG-EEAFYDNFRRSAYQEADIDTVRIIRELTQRGELH 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 476,503
Number of extensions: 18317
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)