BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0717.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309902|ref|YP_003773994.1| dithiol-disulfide isomerase inv...    64   2e-11

>gi|300309902|ref|YP_003773994.1| dithiol-disulfide isomerase
           involved in polyketide biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 24/205 (11%)

Query: 11  VEIWSDIMCPFCFIGKRKFDEALAAFGHKDKIQVVWRSYRLFPEVRYREGSDACAVLAKV 70
           ++++++I CP+CF+G+ + D+ L     +    +      L P+             A V
Sbjct: 4   IDLYTEITCPWCFVGQHRLDKVLRERFAELTADIHHHPVLLLPD-------------APV 50

Query: 71  KGLATSSM----------RQAMAHVTALGRDVGIRFDFDRLKMVDTLDSLRLVHLAA-TR 119
            GL    +          + A +   +  R  G   D  R +      +   + LAA  R
Sbjct: 51  TGLYIPDLLRTRYGVTDPKSAFSRPESEARASGFHLDLSRQRYAYPTQAAHAIILAARER 110

Query: 120 DLASEMKERLFQAFFEEGQNLEDHQILAQLGKEVGLDAQAAKTMLTSIAYADEVENDVAQ 179
               ++   +  A+F + +N+ D  +LA L  + G  A  A+ +         +E   A 
Sbjct: 111 RTQHQLAIAITDAYFIDAKNISDVDVLADLAADHGFSADEARAIALDPIQHKRIEQQAAN 170

Query: 180 ARQIGVNGIPFFVLDRQQALSGAQS 204
           +  +GVN +P FV     AL+GA S
Sbjct: 171 SNAVGVNSVPHFVFGSNSALNGACS 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 715,108
Number of extensions: 27552
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)