BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0716.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar ep...    56   4e-09

>gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 109/245 (44%), Gaps = 17/245 (6%)

Query: 7   LVYGATGAQGGAVMSALRASGKKVRVLLRNTDGKSSFEAPGVEVAIGDLDSPAQLLEASR 66
           LV GATGA G  V+  L A+G +VR L+R+  GK +  A   EV +GDL     L  A  
Sbjct: 4   LVTGATGAVGSLVVQGLAAAGAEVRALVRSP-GKMALPADVKEV-VGDLREVTSLRTA-- 59

Query: 67  DVAGVYFALPLQFNADRAILWGRNAIDAAVAAKAPLMVFNTSIVGAAEAGQATGSVAIDI 126
            + GV     L   A   +    N ++ A  A    +V+ + I     A + T       
Sbjct: 60  -LQGVRTLFVLNAVAPDELTQALNVLNLAHQAGIERIVYLSVI----HADRFTDVPHFTG 114

Query: 127 KSALERYLKQAPIPSIVLRPTLYLGNLTAPFATPSIVNDGVLAYPVPAGQK-VSWISWEE 185
           K  +ER ++ + +P+ +LRP  ++ N   P   P + + GV  YP+P G   V  I   +
Sbjct: 115 KHTVERMIEGSGLPATILRPAYFMQN-DVPL-LPVLSSYGV--YPMPIGPSGVEMIDVRD 170

Query: 186 TAAYVVAAL---QRPDLAATRPSFDIGGAQAITGNELATAIGKAVGRSVSYFPLPIGQFE 242
            A   VA L    R D      + D+ G Q+ TG + A    + + R +      +  FE
Sbjct: 171 IADIAVAELLARDRADKPLPTRTLDLVGPQSFTGAQAAAVWSEVLQRPIQAGGDDLDAFE 230

Query: 243 AGLSA 247
             L+A
Sbjct: 231 QQLAA 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,055,339
Number of extensions: 45993
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)