BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0713.p
         (899 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis pro...  1303   0.0  

>gi|300313600|ref|YP_003777692.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 882

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/898 (70%), Positives = 732/898 (81%), Gaps = 28/898 (3%)

Query: 1   VPTLITKYKYGADKFLRASSIKRDNMTEHVAIQTETFLPYMRDVTKCEQSLQELNLMWRV 60
           +PT+ T      D+ L   +             TETFLPYMRDV +CEQSLQELN MWR+
Sbjct: 1   MPTMTTHNATDKDRILPPET------------HTETFLPYMRDVARCEQSLQELNQMWRI 48

Query: 61  IEASAKMNCPSEAKTILPTMAATRTGFSRLERELVVSLVQEKVRNVLTEIGTKAQYVIDI 120
           IEASAKMNCP+EAK+ILPTMAATR+GFSRLERELV SL  EKVRNVL EIGTKA+YVIDI
Sbjct: 49  IEASAKMNCPAEAKSILPTMAATRSGFSRLERELVSSLAHEKVRNVLAEIGTKARYVIDI 108

Query: 121 VVRNLFERTADVGFLATDRELCNFVAGVTDSVEAIRYRLREYRNKYTVYDEIMLLDTEGN 180
           VVRNLFERTADVGFLATDRELCNFVAG+TDSVEA RYRLREYRNKYTVYDEI+LLDTEGN
Sbjct: 109 VVRNLFERTADVGFLATDRELCNFVAGLTDSVEATRYRLREYRNKYTVYDEIILLDTEGN 168

Query: 181 VLVQIDPATPLEHSADALIAETLNSDTYVETFRFSDLRPGKERALIYSRRMQHPQTGAVV 240
           VLVQIDP TPLEHSAD LI +TL SDTYVETFR +DLRP KERAL+YSRRM HPQTGAV+
Sbjct: 169 VLVQIDPTTPLEHSADPLIRQTLESDTYVETFRATDLRPAKERALVYSRRMHHPQTGAVI 228

Query: 241 GILCLCFHFEEEMAGIFSSHRDAEARSNMLLLDADNRVIASADKLWIPVGTEVPVNRDGN 300
           G+LCLCFHFEEEMAGIF++H D + RSNMLLLD +NRVIASAD LWIP G+EVPVN DG 
Sbjct: 229 GVLCLCFHFEEEMAGIFAAHGDPQGRSNMLLLDGENRVIASADALWIPPGSEVPVNIDGQ 288

Query: 301 AALMLFCGREYLVRTVSSDGYQGYPGPGGWQGQVMIPVEVAFSGVISDVLTKLSPEIAEG 360
             LM+  GR+YLVRT +S+GYQGYPGP GWQGQVMIPV+VAF+   SD L++L+PE+AEG
Sbjct: 289 PRLMMHSGRQYLVRTFASEGYQGYPGPTGWQGQVMIPVDVAFNDSASDTLSQLAPEVAEG 348

Query: 361 LLSHAHSFCPPLYDIMTAAKTIQRIVWNGQVMTAGQRGEMLKLKTILDQISETGNRSNEL 420
           LL+HAHSFCPPL+DIMTAAKTIQRIVWNGQVMTAGQRGEM+KLKTILDQISETGNRSNEL
Sbjct: 349 LLAHAHSFCPPLHDIMTAAKTIQRIVWNGQVMTAGQRGEMIKLKTILDQISETGNRSNEL 408

Query: 421 FAQSIHDLYQTVLVSGMRDAEFTTSLLVDLLDRNLYERSDDCRWWALTPELRSALAQPVQ 480
           FAQSIHDLYQTVLVS MRDAEFTTSL+VDLLDRNLYERSDDCRWWALTPELRS LA   Q
Sbjct: 409 FAQSIHDLYQTVLVSSMRDAEFTTSLMVDLLDRNLYERSDDCRWWALTPELRSMLA---Q 465

Query: 481 DQAAVD---KMTNILTYINGLYTVYTRIFVYDRHGRIIASTGGNTDEIVGRNIDEDSLHQ 537
           DQ + D   K+++IL  IN LYTVYTR+FVYDRHGRI+ASTG   + ++G +ID+ +L  
Sbjct: 466 DQVSADDSAKISSILAAINRLYTVYTRLFVYDRHGRIVASTGDALESVLGSHIDQTTLEA 525

Query: 538 VLSLRTQQQYHVSAFTPSALYDGKDTYVYHAAVRDLENEAVVVGGIGIVFDSTPEFSNML 597
           V +LR+ QQYHVS F PS LYDG+ TY+YHAA+R L+ +A VVGGIGIVFD+ PE  NML
Sbjct: 526 VSTLRSAQQYHVSPFGPSNLYDGRHTYIYHAAIRALDQDA-VVGGIGIVFDAEPELRNML 584

Query: 598 ASGITAKKNMKAYYIDRNARIISTTDSARSVGETLAIDPALLTIANGGRASQVAVHDGEY 657
            +G++ K+ M A+Y+ R+ RI+S+TD+AR VG TL ID  +L + +G   S V +HDG+Y
Sbjct: 585 VAGLSGKQRMSAFYVSRDGRILSSTDAARPVGGTLEIDATMLQLDHGAHRSGVTLHDGQY 644

Query: 658 AIVACSVSNGYREFKVSDGYQEDVIAVVFESFGAVQGAGSQTDGRQYLLETDPTITDGN- 716
           AIVA S S+GYREFK SDGYQEDVIAVVF+ FGA+   G+      + LE D  +     
Sbjct: 645 AIVATSASSGYREFKTSDGYQEDVIAVVFQCFGAINEGGTSNSSSAFQLEQDVAVNRNGE 704

Query: 717 --EYATFFSDHNLFAISAAHVVEAVPFSEVLPTSMGTRPEQIGVLNLRRDDGDGKRKEFV 774
             EYATFFSDH+LFAI+A HV+EAVP+SEVLPTSMG+RPEQIG+L L R   +G+ ++F+
Sbjct: 705 DLEYATFFSDHSLFAIAAVHVMEAVPYSEVLPTSMGSRPEQIGILGLER---EGQHRDFI 761

Query: 775 WVFDLGQMMRGTRSAVSGSSQVMIVREGEHTIGLLVDELHAVPQFNPAQIMHTPFAMQGA 834
           WVFDLG ++RGTRSA++ SSQVMIV+ G HTIGLL DELHAVPQF  AQI+HTPFA+QG 
Sbjct: 762 WVFDLGFLIRGTRSAITSSSQVMIVQHGAHTIGLLADELHAVPQFGQAQIIHTPFALQGE 821

Query: 835 SMLVTQVIKANNGQLLIQAIDVERLFALLIDGQIALPPESA-EAVAQQTDTVAPADGE 891
           SMLV+ VIKAN GQLLIQAI V+RLFA ++DG +  P  +A E V Q T    P   E
Sbjct: 822 SMLVSHVIKANGGQLLIQAIAVDRLFAWVVDGSV--PHANALELVPQDTGAAPPPQVE 877


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,611,416
Number of extensions: 105761
Number of successful extensions: 291
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 1
Length of query: 899
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 805
Effective length of database: 1,174,780
Effective search space: 945697900
Effective search space used: 945697900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)