BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0709.p
         (622 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313597|ref|YP_003777689.1| phosphoenolpyruvate carboxykina...  1184   0.0  

>gi|300313597|ref|YP_003777689.1| phosphoenolpyruvate carboxykinase
           [Herbaspirillum seropedicae SmR1]
          Length = 622

 Score = 1184 bits (3064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/622 (90%), Positives = 591/622 (95%)

Query: 1   MNQPVMESVAALNAPAFVKHQKLINWVAEIAALTKPESIYWCDGSQEEYDRLCAEMVAAG 60
           MNQP+M  + A+NAPA VKHQKLINWVAEIAALTKP  IYWCDGSQEEYDRLCAEMVAAG
Sbjct: 1   MNQPLMAGIPAVNAPAHVKHQKLINWVAEIAALTKPARIYWCDGSQEEYDRLCAEMVAAG 60

Query: 61  TMKKLNQDKRPNSYLACSDPSDVARVEDRTFICSKNKDDAGPTNNWTDPAEMRTTLNGLF 120
           TMKKLN +KRPNSYLACSDPSDVARVEDRTFICS+NK+DAGPTNNWTDPAEMR TLNGLF
Sbjct: 61  TMKKLNPEKRPNSYLACSDPSDVARVEDRTFICSQNKEDAGPTNNWTDPAEMRQTLNGLF 120

Query: 121 DGSMRGRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGTDGDF 180
           DG M GRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGTDG+F
Sbjct: 121 DGCMAGRTLYVVPFSMGPLGSPIAHIGVELSDSPYVAVNMRIMTRMGKAVYDVLGTDGEF 180

Query: 181 VPCVHTVGAPLQAGEKDVAWPCNPTKYIVHYPETHEIWSYGSGYGGNALLGKKCFALRIA 240
           VPCVHTVGAPL AG+KDVAWPCN TKYIVHYPET EIWSYGSGYGGNALLGKKCFALRIA
Sbjct: 181 VPCVHTVGAPLAAGQKDVAWPCNATKYIVHYPETREIWSYGSGYGGNALLGKKCFALRIA 240

Query: 241 STMGRDQGWLAEHMLILGVESPEGKKHYVAAAFPSACGKTNFAMLIPPKSFDGWKVTTIG 300
           STMGR QGWLAEHMLILGVESPEGKKHYVAAAFPSACGKTNFAMLIPPK+F GWKVTTIG
Sbjct: 241 STMGRAQGWLAEHMLILGVESPEGKKHYVAAAFPSACGKTNFAMLIPPKAFGGWKVTTIG 300

Query: 301 DDIAWIKPGEDGRLYAINPEAGYFGVAPGTNEKTNFNCMASLRANTIFTNVALTDDGDVW 360
           DDIAWIKPG DGRLYAINPEAGYFGVAPGTNEK+N+NCMAS+ ANTIFTNVALTDDGDVW
Sbjct: 301 DDIAWIKPGADGRLYAINPEAGYFGVAPGTNEKSNYNCMASVSANTIFTNVALTDDGDVW 360

Query: 361 WEGMTKEAPAHLIDWQGKDWTPAIAKETGRKAAHPNARFTVAATQNPVIDAAWDDPAGVP 420
           WEGMTKEAPAHLIDWQGKDWTP I KETGRKAAHPNARFTVAATQNPVID AWDDPAGVP
Sbjct: 361 WEGMTKEAPAHLIDWQGKDWTPEIGKETGRKAAHPNARFTVAATQNPVIDPAWDDPAGVP 420

Query: 421 ISAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFAG 480
           ISAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFAG
Sbjct: 421 ISAFIFGGRRSTTVPLVTEARNWVEGVYMAATMGSETTAAAVGQQGVVRRDPFAMLPFAG 480

Query: 481 YNMSDYFQHWLNLGRKIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWMLERI 540
           YNMS+YFQHWL++G+KIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWML+RI
Sbjct: 481 YNMSEYFQHWLDIGKKIAASPAELPKIYCVNWFRTDADGKFVWPGFGDNMRVLKWMLDRI 540

Query: 541 EDPQGVRVGGVPHIFGVSPRYEDLQWDGIDFTPEQFATITSIDKAAWAREVELHTELFDK 600
           EDPQGV+ GGV H+FG++PR+EDLQW+G+DF+ +QFATITSIDKAAW +E+ELH ELFDK
Sbjct: 541 EDPQGVKSGGVEHLFGITPRFEDLQWEGLDFSADQFATITSIDKAAWLKELELHAELFDK 600

Query: 601 LKHNLPRELVEVKVALQKKLAA 622
           LKH LP EL  VK  L+KKLAA
Sbjct: 601 LKHKLPAELQGVKDKLEKKLAA 622


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,217,324
Number of extensions: 101991
Number of successful extensions: 220
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,188,985
Effective search space: 631351035
Effective search space used: 631351035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)