BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0708.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioestera...   211   3e-56
gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum se...    60   8e-11

>gi|300313596|ref|YP_003777688.1| 4-hydroxybenzoyl-CoA thioesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  211 bits (536), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 117/140 (83%)

Query: 4   KPTASRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHFLMASRALDIPGGDVI 63
           +P   RRAD+ HFHA+ TRWMDNDVYGHVNNVVYYSWFDTAVNH+L+   ALDI  G+VI
Sbjct: 5   RPQPGRRADFLHFHAIPTRWMDNDVYGHVNNVVYYSWFDTAVNHYLVQQGALDIEHGEVI 64

Query: 64  GLVIETHCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTAAAQGHFIHVYVD 123
           GLVIET CNYFA V+FPD +++GVRVA +G SSVRYE+GIF+ G ++AAA+GHF+HVYVD
Sbjct: 65  GLVIETQCNYFASVAFPDLIEVGVRVAHLGRSSVRYELGIFKAGEESAAARGHFVHVYVD 124

Query: 124 AATRRPVTVPERMRSVLRTI 143
            A+RRPV +PE +R+ L  +
Sbjct: 125 RASRRPVALPEALRAALMPL 144


>gi|300311112|ref|YP_003775204.1| thioesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 141

 Score = 59.7 bits (143), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 1   MTSKPTASRRADYPHFHALQTRWMDNDVYGHVNNVVYYSWFDTAVNHFLMASRALDIPGG 60
           M+S P A+ +  Y     +  RW D D +GHVNN VY+ + +     +L       I G 
Sbjct: 1   MSSHPQANSKQLYLSRQTI--RWGDMDAFGHVNNTVYFRFMEQCRIEWLEEVFGPTIAGE 58

Query: 61  DVIGLVIETHCNYFAPVSFPDTVQIGVRVASVGNSSVRYEVGIFREGGDTAA--AQGHFI 118
           +   +++  HCN+   + +P  + + +    +G +SV     I R+  D     A G   
Sbjct: 59  EG-PVIVNAHCNFRRQMKYPARICVEMSAGHLGRTSVE-TTYIIRDAADEQIIYADGAAK 116

Query: 119 HVYVDAATRRPVTVPERMRSVLRTI 143
            V+VD    +   +PE++R +L ++
Sbjct: 117 IVWVDFKKEKSTALPEQLRQLLTSL 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,903
Number of extensions: 18255
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)