BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0706.p (535 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 917 0.0 gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 144 1e-35 gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 72 1e-13 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/521 (88%), Positives = 493/521 (94%), Gaps = 2/521 (0%) Query: 5 MLDANLKAQLKAYLEKVTQPIEIVASLDDGAKSHELQELLQEIVTLSERITLVERN--DH 62 MLDANLK QLKAYLEKV+ PIEIVASLDDGAKS E+QELLQ+IV LS+RI LVE+ D Sbjct: 1 MLDANLKTQLKAYLEKVSHPIEIVASLDDGAKSREMQELLQDIVLLSDRIKLVEQRGADA 60 Query: 63 AVRKPSFSLNRPGTDISVQFAGIPMGHEFTSLVLALLQVGGHPIKLDDKVIEQIRNLDGD 122 R PSF LNRPGTDISV+FA IPMGHEFTSLVLALLQVGGHP+KLDDKVIEQI+NLDGD Sbjct: 61 QGRTPSFKLNRPGTDISVEFAAIPMGHEFTSLVLALLQVGGHPVKLDDKVIEQIKNLDGD 120 Query: 123 YSFETYISLTCQNCPEVVQALNVMSIINPRIRSVTVDGALFQDEVEKRQIMAVPTVYMNG 182 Y FETY+SLTCQNCPEVVQALNVMSIINPRI+SVT+DGALFQ EVE+RQIMAVPTVYMNG Sbjct: 121 YRFETYVSLTCQNCPEVVQALNVMSIINPRIQSVTIDGALFQGEVEQRQIMAVPTVYMNG 180 Query: 183 EVFGQGRTGVEEILAKLDTGAAARKGEELSAKEAYDVLIVGGGPAGAAAAIYAARKGIRT 242 EVFGQGRTGVEEILAKLDTGAAARKGEELSAKE YDVLIVGGGPAGAAAAIYAARKGIRT Sbjct: 181 EVFGQGRTGVEEILAKLDTGAAARKGEELSAKEPYDVLIVGGGPAGAAAAIYAARKGIRT 240 Query: 243 GVVAERFGGQVLDTLAIENFVSVKETEGPQFATALEQHVRTYDVDIMNTQRAEALVPGDG 302 GVVAERFGGQVLDTLAIENF+SV+ETEGPQFATALEQHV+ YDVDIMN QRAEALVPGD Sbjct: 241 GVVAERFGGQVLDTLAIENFISVQETEGPQFATALEQHVKAYDVDIMNVQRAEALVPGDK 300 Query: 303 MIEVRLANGGVLKGKTVILSTGARWRQVNVPGEDEYRNHGVAYCPHCDGPLFKGKRVSVI 362 +IEV+LANGGVLKGKTVILSTGARWR VNVPGE EY+N GVAYCPHCDGPLFKGKRVSVI Sbjct: 301 LIEVKLANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVI 360 Query: 363 GGGNSGVEAAIDLAGIVSHVTLLEFAAELKADAVLVRKLKSLPNVTIITSAQTSEITGDG 422 GGGNSGVEAAIDLAGIV+HVTL+EFAAELKADAVLVRKLKSLPNVTI+TSAQT+EITGDG Sbjct: 361 GGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDG 420 Query: 423 KKVNGISYKERISGEVKHIELEGVFVQIGLVPNTEWLKGTVALSKHGEIEIDAKGQTSIP 482 ++VNGISYKER +GE+KH+ LEGVFVQIGLVPNTEWLKGT+ALSKHGEIEIDAKGQTSIP Sbjct: 421 QRVNGISYKERETGEIKHVPLEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKGQTSIP 480 Query: 483 GVFAAGDVTTVPYKQIVIAVGEGSKAALSAFDHLIRSSAPE 523 GVFAAGDVTTVPYKQIVIAVG G+ AALSAFDHLIRSSA + Sbjct: 481 GVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHLIRSSADD 521 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 162/317 (51%), Gaps = 31/317 (9%) Query: 219 VLIVGGGPAGAAAAIYAARKGIR----TGVVAERFGGQVLDTLAIENFVSVK-ETEGPQF 273 VLI+G GPAG +AA+YAAR + TGV GGQ++ T +EN+ +GP+ Sbjct: 10 VLILGSGPAGYSAAVYAARANLNPVLITGV---EQGGQLMTTTDVENWPGDPLGVQGPEL 66 Query: 274 ATALEQHVRTYDVDIM-----NTQRAEALVPGDGMIEVRL-ANGGVLKGKTVILSTGARW 327 L QH + +I+ T+ +E RL + G +I++TGA Sbjct: 67 MQRLLQHAERFKTEIIFDHIHTTKLSER--------PFRLIGDSGEYTADALIIATGASA 118 Query: 328 RQVNVPGEDEYRNHGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVSHVTLLEF 387 + + +P E + GV+ C CDG ++GK V+V+GGGN+ VE A+ L+ I S VT++ Sbjct: 119 QYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHR 178 Query: 388 AAELKADAVLVRKLK---SLPNVTIITSAQTSEITGDGKKVNGISYKERISGEVKHIELE 444 + +A+ +L+ +L S + I E+ GD V GI K + I + Sbjct: 179 RDKFRAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIPVH 238 Query: 445 GVFVQIGLVPNTEWLKGTVALSKHGEIEIDAKGQ-----TSIPGVFAAGDVTTVPYKQIV 499 G+F+ IG PNT +G +++ ++G ++ + TSI GVFAAGDV Y+Q + Sbjct: 239 GLFIAIGHKPNTSIFEGQLSM-QNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAI 297 Query: 500 IAVGEGSKAALSAFDHL 516 + G G AAL A +L Sbjct: 298 TSAGTGCMAALDAQRYL 314 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/313 (25%), Positives = 131/313 (41%), Gaps = 43/313 (13%) Query: 218 DVLIVGGGPAGAAAAIYAARKGIRTGVVAER--FGGQVLDTLA---IENFVSVKETEGPQ 272 D +I+G GP G I+ V+ GGQ ++ I + +V G + Sbjct: 17 DAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPDKPIYDIPAVPVCTGQE 76 Query: 273 FATALEQHVRTY--------DVDIMNTQRAEALVPGDGMIEVRLANGGVLKGKTVILSTG 324 L + + + +V ++N + DG +V + G KT+ ++ G Sbjct: 77 LTDNLLKQIEPFSPTFHLGQEVTLVNKRE-------DGRFDVETSTGTKFITKTIFIAAG 129 Query: 325 A---RWRQVNVPGEDEYRNHGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVSH 381 + R + V G +++ V Y D LF+GK + + GGG+S ++ A++ G Sbjct: 130 VGSFQPRTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIVICGGGDSALDWALNFVGKAES 188 Query: 382 VTLLEFAAELKADAVLVRKLKSLP---NVTIITSAQTSEITGDGK----KVNGISYKERI 434 V LL E +A V K+K L + ++ T DGK KV G Sbjct: 189 VILLHRREEFRAAPASVAKMKELCEQYEMQLLIGQVTGTEIKDGKLAEVKVTG------A 242 Query: 435 SGEVKHIELEGVFVQIGLVPN----TEWLKGTVALSKHGEIEIDAKGQTSIPGVFAAGDV 490 G + + L+ + V GL P EW G K ++ K +T++PG+FA GD+ Sbjct: 243 DGVTRRLPLDMLLVFFGLSPKLGPIAEW--GLEIERKQLKVMDTEKFETNVPGIFAVGDI 300 Query: 491 TTVPYKQIVIAVG 503 T P K+ +I G Sbjct: 301 NTYPGKKKLILSG 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,521,621 Number of extensions: 62632 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 3 Length of query: 535 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 445 Effective length of database: 1,193,720 Effective search space: 531205400 Effective search space used: 531205400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)