BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0704.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313592|ref|YP_003777684.1| alpha/beta superfamily hydrolas...   333   5e-93

>gi|300313592|ref|YP_003777684.1| alpha/beta superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  333 bits (855), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 188/223 (84%), Gaps = 12/223 (5%)

Query: 1   MNAQTQAFLIPGAAGQLECALDLPDSEQFAAPRARARGXRAPRGLALVAHPHPLYGGTMD 60
           MNA TQ F+I GA G LECALDLPD E F+ P           GLALVAHPHPL+GGTMD
Sbjct: 1   MNAHTQNFMITGAVGALECALDLPDPETFSTPV----------GLALVAHPHPLFGGTMD 50

Query: 61  NKVAQTLARSFLALGYVTVRMNFRGVGKSAGVHDHGHGETDDMALLLAHMRTQYPDLPVT 120
           NKVAQTLAR+FLALGYV VRMNFRGVGKS GVHDHG GETDDMALLL HMR+QYPDLP+ 
Sbjct: 51  NKVAQTLARTFLALGYVAVRMNFRGVGKSEGVHDHGAGETDDMALLLQHMRSQYPDLPLA 110

Query: 121 LGGFSFGTFVQAQLQQRLIAE--GTPAERLALVGTAAGKWPMPPVPADTILIHGELDDTI 178
           L GFSFGTFVQAQLQQRL+ +   + AERL LVGTAAGKWPMPP PADTILIHGE DDTI
Sbjct: 111 LAGFSFGTFVQAQLQQRLLQQDPASAAERLVLVGTAAGKWPMPPAPADTILIHGEQDDTI 170

Query: 179 PLTAVLDWARPQELPVIVIPGADHFFHRKLQHIKTLIVQMWHR 221
           PL+AVLDWARPQELPV+VIPG+DHFFHRKLQHIK ++VQ WHR
Sbjct: 171 PLSAVLDWARPQELPVVVIPGSDHFFHRKLQHIKNVVVQSWHR 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 738,871
Number of extensions: 31271
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)