BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0702.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313590|ref|YP_003777682.1| transmembrane protein [Herbaspi...   502   e-143

>gi|300313590|ref|YP_003777682.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  502 bits (1292), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/348 (72%), Positives = 293/348 (84%)

Query: 1   LLIYALLIVYASWYPFSGWRDMGLLPYDYLWARLPYYWTGFDLWTNVIGYAPFGALVVYA 60
           LL+YALLIVYASWYPFSGWRD+G+ P+DYLWARLPYYWTGFD+WTNV GYAP G L+V A
Sbjct: 30  LLVYALLIVYASWYPFSGWRDLGIKPFDYLWARLPYYWTGFDVWTNVAGYAPLGLLLVLA 89

Query: 61  LYPRVRSVWAVLLGTLAGVALSAVMEAVQTYLPTRIPSNLDLITNSCGTFLGALIGAWTS 120
           ++P +R  WAVL  TLAGV LSA MEA QTYLPTR+PSNLDL+TN+ G  LGAL+GA  S
Sbjct: 90  MHPHIRPWWAVLPATLAGVLLSACMEAGQTYLPTRVPSNLDLLTNAVGVTLGALLGAACS 149

Query: 121 RYFLRQSRLLEIRRSWFSREASRGLVVVGLWPLALIYPQNHLFGLGHVVPPLSSLLSDLL 180
           R FL +SR L  R+ WF  EASRGL V GLWPLALIYPQNHLFGLG++VPPLS   SDLL
Sbjct: 150 RTFLHESRFLLARQRWFPAEASRGLAVAGLWPLALIYPQNHLFGLGNLVPPLSGFFSDLL 209

Query: 181 DTPIDLATWWTNNAQLSAEQYWLAEIIVTACGLTGAVLTMLLLLRKPAPRNMLMAIYLFG 240
           DTPIDLAT W NNAQLSAEQYWLA++IVTACGLTGA L +L LLR+ APR  L+A+YL  
Sbjct: 210 DTPIDLATTWLNNAQLSAEQYWLADVIVTACGLTGAALLVLQLLRRQAPRRRLVALYLLA 269

Query: 241 AVFIKSLSCALFFAPENAFAWFTPGAAGGMIVGGLMLAGLSFAPPVAQRRIAGLALIFSL 300
            +  KSL+CALFFAP+NAF W +P A GG+++G +M+AGLS+APP AQRR+AGLAL  SL
Sbjct: 270 CIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTMMIAGLSWAPPTAQRRVAGLALFLSL 329

Query: 301 LATNAVPANPYFVSTLQTWVQGKFLNFDGAAQFLSVLWPFLALWFLYH 348
           + TNAVPANPY++STL+TWVQGKFLNFDGAAQFLSV+WPFLALW LY 
Sbjct: 330 VVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSVIWPFLALWVLYR 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,104,760
Number of extensions: 42930
Number of successful extensions: 188
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)