BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0701.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313589|ref|YP_003777681.1| bifunctional biotin operon repr...   302   2e-83

>gi|300313589|ref|YP_003777681.1| bifunctional biotin operon
           repressor/biotin-[acetyl-CoA- carboxylase] synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  302 bits (773), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/264 (59%), Positives = 197/264 (74%), Gaps = 9/264 (3%)

Query: 23  LIASSSNDNAKTVAVEVVAETGSTNADLLARVTAVDGARLVAPVLLVAESQTAGRGRAGR 82
           L+A S +   + + VE VA TGSTN DL+ RVT+     L  P+LLVA+ QTAGRGRAGR
Sbjct: 2   LLAGSDSQGQQRIDVEAVACTGSTNVDLMQRVTS-----LTRPLLLVADRQTAGRGRAGR 56

Query: 83  PWQTSKTSALTFSLAWKFGRPLHALIGLPLAVGVALAEALGIFGIDVELKWPNDVLRDGA 142
           PW+ +   +LTFSLAW+F RP+HAL+GLPLAVGVALAEAL +FG+  +LKWPNDVLR+GA
Sbjct: 57  PWRAAPEDSLTFSLAWRFERPMHALLGLPLAVGVALAEALEVFGVRPQLKWPNDVLREGA 116

Query: 143 KLAGILIETAQDKGAGAAGIAGTWTVIGIGVNLTMPPDLQQRIGRAVADVSELLTHDRER 202
           KLAGILIETA D   G A    TW VIGIG+NL +P  L+Q + RA+A V EL    RE 
Sbjct: 117 KLAGILIETASDGRRGDA----TWAVIGIGLNLGVPQGLEQELQRAIAAVPELRKPPRET 172

Query: 203 LLAILLSALSDALADFDARGFTHFVARWNRLHAYTGRAVRILDDGRMLHEGVAVGVDEQG 262
           +LAI+ SAL++ L +F+ RGF  FV RW   HAY G+AV+I+D+GR+LHEG AVGVD  G
Sbjct: 173 VLAIIASALAEVLTEFEQRGFGAFVRRWEAFHAYAGQAVKIVDNGRLLHEGRAVGVDMMG 232

Query: 263 CFLMDTASGRVAVTAGDVSLRLRE 286
            FL+DT +G+VAV  GD+SLRL++
Sbjct: 233 RFLLDTEAGQVAVMVGDLSLRLQD 256


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 670,217
Number of extensions: 20998
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)