BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0700.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313588|ref|YP_003777680.1| transcription regulation access...   295   3e-81

>gi|300313588|ref|YP_003777680.1| transcription regulation accessory
           factor transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  295 bits (755), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 157/256 (61%), Positives = 186/256 (72%), Gaps = 9/256 (3%)

Query: 1   MLLLIDVGNTLIKWGVPAEQIFSVAGAGRWRHVGAVARGEVAALTQAWQGLPV-VRVLVS 59
           M+LLID GNT IKW VP++        GRWR  GAVARGE+ +L QAW  L    R+ VS
Sbjct: 1   MMLLIDAGNTRIKWAVPSDHPQR---EGRWRQQGAVARGELQSLAQAWAALDRPQRICVS 57

Query: 60  NVAGPAVREALQATLHAAFGKELRIDWFASQPQLAGVRNRYKNPGQLGCDRFASAIGAHA 119
           NVAGPA+RE+LQ  L   FG    I+WFAS  + AG+RN Y++P +LGCDRFA+AIGA A
Sbjct: 58  NVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAAAIGARA 117

Query: 120 LFPQRALIVATCGTATTVDAVTSDGVFLGGMILPGLGVMATSLALNTAQLPQIQSINAVA 179
           L+P   L+VATCGTATT+D V++ GVF GGMILPG G MATSLALNTAQLPQI  +  +A
Sbjct: 118 LYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQIDEVTPLA 177

Query: 180 TPFADNTTDAIIAGCIAAQTGAIERAVAAHRQTHGEV--LCVLAGGAGPVLAPYLSM--- 234
             FADNT +AI++GCIAAQ GAIE A+AA  + H      C+LAGGAG VLAPYL +   
Sbjct: 178 GIFADNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPYLVLGET 237

Query: 235 PCEKVDNLVLIGLHVA 250
           P EKVDNLVLIGLH A
Sbjct: 238 PLEKVDNLVLIGLHTA 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 857,437
Number of extensions: 36441
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)