BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0699.p
         (261 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313587|ref|YP_003777679.1| signal peptide protein [Herbasp...   251   3e-68

>gi|300313587|ref|YP_003777679.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 259

 Score =  251 bits (642), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/250 (54%), Positives = 176/250 (70%), Gaps = 3/250 (1%)

Query: 11  IGNAALFAMQRGYLGATASERHEPKRLAQQLHPETLTILPANSEKLVSPAKSDAPAGTVA 70
           +GN  LF + RGY GA A+ER EP+RLA+QLHPE L++LPANSEKL S  +S APA   +
Sbjct: 12  VGNVILFGLPRGYFGANATERREPQRLAEQLHPELLSVLPANSEKLASQTRSQAPAAAPS 71

Query: 71  AAAAEDAAKDAKPGKPDATPPEAKAPADAAAPAVPLIACTEIGNFNAVEVRKFDVQLSSL 130
           A+AA  A  D       A P      A  AA   P  +CTE+GNF   + ++F  QL+SL
Sbjct: 72  ASAAAPAGADPAAAANAAAPATQPPAAQVAA-VTP--SCTEVGNFTVADAKRFSEQLASL 128

Query: 131 NLPVKPTTRSVQEAASHMVYIPTQDGKEGADRKTAELRRLGIQDFYVMPESQPNPALRWA 190
           NL  +   +  Q+  SHMVYIP QDG+EGA+R+ AELRRLGI DFYV+P+S PNPALR  
Sbjct: 129 NLGDRVAQKLTQDVTSHMVYIPPQDGREGAERRIAELRRLGIGDFYVLPDSFPNPALRSG 188

Query: 191 ISLGVFKTEEAAKAYIGRLIPQGVRSARIMARNVTSNKQAYQWRNVDAATKTALDGLKAK 250
           ISLG+F+TEEAAKAY+G+LI +GVRSARI+AR   + KQ +Q R++    +TALD +K+ 
Sbjct: 189 ISLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRDLSPEARTALDNIKSA 248

Query: 251 FPNQEMRSCT 260
           FP+QE+R+C+
Sbjct: 249 FPDQEIRACS 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,786
Number of extensions: 21674
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 178
Effective length of database: 1,226,865
Effective search space: 218381970
Effective search space used: 218381970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)