BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0698.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313586|ref|YP_003777678.1| acetylglutamate kinase [Herbasp...   570   e-164
gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase [Her...   112   5e-26

>gi|300313586|ref|YP_003777678.1| acetylglutamate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  570 bits (1469), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 285/295 (96%), Positives = 288/295 (97%)

Query: 5   TDLTDVDPIIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEERLKHGFARDVILLKLVGM 64
           TDLT+V P IKAEILAEALPYIRKFHGKTIVVKYGGNAMTEE LKHGFARDVILLKLVGM
Sbjct: 3   TDLTNVAPQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGM 62

Query: 65  NPVVVHGGGPQIDNALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINHYG 124
           NPVVVHGGGPQID ALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINHYG
Sbjct: 63  NPVVVHGGGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINHYG 122

Query: 125 GQAVGLTGKDGGLIRARKMQMPDKENPGQFLDIGFVGEIEAINPAVVKALQDDAFIPIIS 184
           GQAVGLTGKDGGLIRARKMQMPDKE+PG FLDIG+VGEIEAINPAVVKALQDDAFIPIIS
Sbjct: 123 GQAVGLTGKDGGLIRARKMQMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPIIS 182

Query: 185 PIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKKGNLLTDLSAREIDEMF 244
           PIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDK GNLLTDLSAREIDEMF
Sbjct: 183 PIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMF 242

Query: 245 EDGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH 299
            DGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH
Sbjct: 243 ADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH 297


>gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 16/284 (5%)

Query: 19  LAEALPYIRKFHGKTIVVKYGGNAMTEERLKHGFARDVILLKLVGMNPVVVHGGGPQIDN 78
           L    PY+  F GKT VV + G  +T   L+   A+D+ LL  +G+  VVVHG  PQ+  
Sbjct: 25  LRSVAPYVHAFRGKTFVVAFPGELVTAGDLQ-VLAQDLSLLHALGIRVVVVHGSRPQVAE 83

Query: 79  ALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH------YGGQAVGLTG 132
            L     +  F  G+R+ D   +E  +    GE++ DI    +           A+ +  
Sbjct: 84  QLALRNVEARFHNGLRVADSAALECAKEA-AGELRLDIEAAFSQGLPNTPMAHSAIRVI- 141

Query: 133 KDGGLIRARKMQMPDKENPGQFLDIGFVGEIEAINPAVVKALQDDAFIPIISPIGFGDDG 192
             G  + AR M + D       +D+   G +  I   V++ + +   I ++SP+GF   G
Sbjct: 142 -SGNFVTARPMGVIDG------VDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTG 194

Query: 193 QAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKKGNLLTDLSAREIDEMFEDGTISGG 252
           +A+N+  + VA   A  L AEKLI ++    + D  G  + +LS+ + + +   G +S  
Sbjct: 195 EAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFLSPE 254

Query: 253 MLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 296
               ++S + A  +GV+  HI+    + S LLE+ T    GTM+
Sbjct: 255 AAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMV 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 983,737
Number of extensions: 43956
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)