BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0697.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...   246   1e-66
gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465...    72   6e-14

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  246 bits (629), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/268 (50%), Positives = 170/268 (63%)

Query: 1   LFKVQDARHTLYLFGTIHVGAANFYPLEPRVMQALEQAPAIALEIDPKKTPAMQAAVLRY 60
           L++V D RHTL LFGTIHVGA +FYPLEPR+ QAL  AP +ALE+DP+   AMQ A  R+
Sbjct: 36  LYEVSDGRHTLLLFGTIHVGAPDFYPLEPRLRQALAAAPVLALELDPQNAAAMQEAAQRH 95

Query: 61  GFYPEGQSYQTDLTPQLQQQVQAALKKYNVPAEAVARFRPWMIASLLTVQEFGSKGYRSD 120
           G YP GQ     L P L+Q+  A L++  +P + V   RPWM+A  LTVQE+   GY+S 
Sbjct: 96  GLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQGVQNLRPWMLALALTVQEYARHGYQSA 155

Query: 121 LAVDGHLADFVTKRNKPVIELEGAETQLALFGALSRQQQTLLLEDTLKELDDPDSAARVV 180
           LAVD HLA  V      ++ELE AE Q+ LF  LS  QQ   L+DTLKEL D     R+ 
Sbjct: 156 LAVDSHLAASVRAHGGQILELESAERQMRLFSQLSDAQQAQFLDDTLKELQDSHLNRRID 215

Query: 181 ELAEFWRTANLSGLQSLLDEMAGDGSFVGRFTKDVLLDQRNPALAERIGGLLKSRDRIFA 240
            L + WR A+ +GL S L E+  D SF  RFT   LL  RNP LA  I  LL+ +D+  A
Sbjct: 216 TLVDAWRHADSAGLASALRELQEDDSFTSRFTLKNLLRDRNPGLATGIAALLRRQDKAVA 275

Query: 241 AIGILHLVGPTGVPALLQQRGFKVERIY 268
            IGILHL GP  VPALL ++G +V ++Y
Sbjct: 276 GIGILHLTGPDSVPALLAKQGLQVRQLY 303


>gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465
           [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 71.6 bits (174), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 25/273 (9%)

Query: 1   LFKVQDARHTLYLFGTIHVGAANFYPLEPRVMQALEQAPAIALEIDPKKTPAMQAAVLRY 60
           L+++    H  YL+GTIH+    +    P +++AL  A  + +E+D  + P M A +L  
Sbjct: 55  LWEISKDGHLSYLYGTIHLARLEWDFPGPTILKALRSARTVVVEMDITR-PGMAATML-- 111

Query: 61  GFYPEGQS------YQTDLTPQLQQQVQAALKKYNVPAEAVARFRPWMIASLLTVQEFGS 114
              P+  +      YQ+ L    QQ  +A     N    ++A      +ASL T+     
Sbjct: 112 APMPQQAADVSSPLYQSLLARTDQQLRKACADPENFKGASLAS----KMASL-TLLSARR 166

Query: 115 KGYRSDLAVDGHLADFVTKRNKPVIELEGAETQLALFGALSRQQQTLLLEDTLKELDDPD 174
           +G  +D A+D  L  F     K +IELE    Q  +      Q Q   LE  L +++   
Sbjct: 167 RGLYADFAIDAALIGFARYTRKDIIELEQPSDQRRVIS----QTQLASLERNLDDVESGK 222

Query: 175 SAARVVELAEFWRTANLSGLQSLLDEMAGDGSFVGRFTKDVLLDQRNPALAERIGGLLKS 234
           +   +  LA  W   ++ G+  L  ++   G       +    +QRN   A  I   +  
Sbjct: 223 TEDDLSALALAWERGDMGGIAELCKQLQCQG-------EQQYYEQRNKVFAAGIAKAMAG 275

Query: 235 RDRIFAAIGILHLVGPTGVPALLQQRGFKVERI 267
               F  +G LH++GP  V   L+  GF+V ++
Sbjct: 276 PGPAFIGVGFLHMLGPDSVIDQLRAMGFEVRQV 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 766,965
Number of extensions: 29297
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)