BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0693.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313581|ref|YP_003777673.1| hypothetical protein Hsero_4296...   357   e-100

>gi|300313581|ref|YP_003777673.1| hypothetical protein Hsero_4296
           [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/221 (75%), Positives = 194/221 (87%)

Query: 17  MTTHLDSDSIADYLLDHPHFFEEHAELLGRIRLTSPLLGRAISLQERQMEILREKIKVQE 76
           MTT LDSD IA+YLL+HPHFFEEHAELL  ++LTSP++GRA+SLQERQMEILREKI+VQE
Sbjct: 1   MTTELDSDLIAEYLLEHPHFFEEHAELLSTVKLTSPVMGRAVSLQERQMEILREKIRVQE 60

Query: 77  LHMADLMRIAQENDEITGKFQAWTRALLLARNDADLPQALAGKLQEIFNVPQVTLRLWNV 136
           L MA+LMRIAQENDEIT KFQAW+RALLL R+  DLP  L  +LQ+IF+VPQVT+RLWN+
Sbjct: 61  LRMAELMRIAQENDEITNKFQAWSRALLLTRDAEDLPAVLVKQLQDIFHVPQVTVRLWNL 120

Query: 137 AESHNDNWYTAAVSEDARIFANGLTTPFCGANNDFEAAGWLEDAASVKSLAMLPLRVGAA 196
             +H DNW    V++DARIFANGL+ PFCG N DFEAA WL+DAA+VKS+AMLPLRVGAA
Sbjct: 121 GAAHADNWAVQEVTDDARIFANGLSAPFCGPNKDFEAATWLDDAATVKSVAMLPLRVGAA 180

Query: 197 PEAFGLLVLGSPDPSRFSADMATDFLSRISETASAALACLL 237
           PEAFGLLVLGSPDP+RF++DM TDFL+RI ET SAALACLL
Sbjct: 181 PEAFGLLVLGSPDPNRFTSDMGTDFLTRIGETGSAALACLL 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,996
Number of extensions: 24366
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)