BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0690.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294...   145   2e-36
gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot...   132   2e-32

>gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294
           [Herbaspirillum seropedicae SmR1]
          Length = 532

 Score =  145 bits (367), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/172 (55%), Positives = 114/172 (66%), Gaps = 4/172 (2%)

Query: 1   LAIIRAARAGQAEAQLALGRRYLFGGNGLPQSFATALHWLDRAARQGMPDAWTLIGEHIP 60
           LAIIRAARAGQA AQL LG+RYLFGGNGLPQS +TA HWL+RAARQ + DAW LI EHIP
Sbjct: 7   LAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWMLIAEHIP 66

Query: 61  YEVVAQAPRPLDYVLWYERAFDAGRKLAGLAFARMVLAHQAQPEAQAMLGKAVKALESEA 120
           YEVV    RP +   WYERAF+ G   AGLAFAR+VL    +P A+ +  +A++ L+  A
Sbjct: 67  YEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAE-LKARAIRVLQVVA 125

Query: 121 NAGTAEAQWLLAQQQGRRQAAGAAIATGEQRAAEQVIAT---QWAQKAADAG 169
             G  +AQWLLA+Q  +     A+ A      A  +      QW QKAADAG
Sbjct: 126 REGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAG 177


>gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 97/138 (70%), Gaps = 1/138 (0%)

Query: 1   LAIIRAARAGQAEAQLALGRRYLFGGNGLPQSFATALHWLDRAARQGMPDAWTLIGEHIP 60
           LA+I+AARAG++ AQLALGRRYL GG+GLP+S  TA +WL RAA+QG+ DAW +IG +I 
Sbjct: 7   LAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMIIGRNIT 66

Query: 61  YEVVAQAPRPLDYVLWYERAFDAGRKLAGLAFARMVLAHQAQPEAQAMLGKAVKALESEA 120
           YE V +   P +  +WYE+AF+AG   AGL FAR+VL + ++ ++     +A+ AL   A
Sbjct: 67  YEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTH-ARAIAALSLLA 125

Query: 121 NAGTAEAQWLLAQQQGRR 138
           +    EAQWLLAQQ  R 
Sbjct: 126 SRDDHEAQWLLAQQMQRH 143


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.131    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,106
Number of extensions: 23121
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)