BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0689.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294...   378   e-106
gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot...   272   3e-74

>gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294
           [Herbaspirillum seropedicae SmR1]
          Length = 532

 Score =  378 bits (971), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 213/251 (84%)

Query: 32  DKMAQLSLGLFFARMNENGGRAFPGFGSANYKKAIRWLTLAGERGLAAAWYALSRIYLKP 91
           D+ AQL+LGL + R++E G R FPG GSANYKKAIRWLTLAGE+G+AAAWY LSRIYLKP
Sbjct: 269 DRDAQLALGLLYGRVDEQGVRCFPGLGSANYKKAIRWLTLAGEQGMAAAWYVLSRIYLKP 328

Query: 92  EFSQRNLADAQHYLERAAEMGHALAQLECGGSAWRNRREDPANDVRAVYWLQKAAAQDSA 151
           EFSQRNLAD QHYLERAAEMGH  AQLECG  AWRNRR++  NDVRA+YWLQKAA+Q   
Sbjct: 329 EFSQRNLADVQHYLERAAEMGHVAAQLECGIGAWRNRRDEAGNDVRALYWLQKAASQGDE 388

Query: 152 DARELLAKIADRPAAAAWAVAAKGHMTRDFLNAYPFLAARLELAILFGLTRPEALLIDLK 211
            A+ LL K+ADRP AAAWAV A+  +TR+ +NA+PFLAAR+ELA LFGLTRPEALLIDLK
Sbjct: 389 QAQALLDKVADRPQAAAWAVLARAQLTREQVNAHPFLAARIELATLFGLTRPEALLIDLK 448

Query: 212 QADCGHCLAVDIRDYYARSKRRLILIETGDERQVLNRIGRLFEDVDCSLNGPEGNYRQRL 271
           QAD GHCL VDIR  YARSKRRLI++E G++R  LNRIGRLFEDVDC  +GPEGNYRQRL
Sbjct: 449 QADRGHCLMVDIRSQYARSKRRLIMVENGEQRGALNRIGRLFEDVDCGPSGPEGNYRQRL 508

Query: 272 YRLKTALPQDD 282
           YRLKT LPQ D
Sbjct: 509 YRLKTVLPQSD 519


>gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score =  272 bits (695), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/279 (51%), Positives = 182/279 (65%)

Query: 1   LLSRLAQVLAEIGDVDAEEAQSLLELGAYADDKMAQLSLGLFFARMNENGGRAFPGFGSA 60
           LL R  Q        D +E Q L EL A   +  A L LGL  A+++  G R F   G A
Sbjct: 232 LLLRYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLA 291

Query: 61  NYKKAIRWLTLAGERGLAAAWYALSRIYLKPEFSQRNLADAQHYLERAAEMGHALAQLEC 120
           N+KKA+ WL  AGE G+A  W+AL+RIY +  +SQRNL  AQHYLE+AA+ G   AQ E 
Sbjct: 292 NFKKALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCEL 351

Query: 121 GGSAWRNRREDPANDVRAVYWLQKAAAQDSADARELLAKIADRPAAAAWAVAAKGHMTRD 180
               WR+RR+DP NDV+A+YW Q+AAAQ    A+  L   A +P A  WA+ A+  +T  
Sbjct: 352 AQVCWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDK 411

Query: 181 FLNAYPFLAARLELAILFGLTRPEALLIDLKQADCGHCLAVDIRDYYARSKRRLILIETG 240
             N+ PFL+AR+ELA  FGLT+PEALLID+K AD GHCL VDI  ++ARSKRRLI ++T 
Sbjct: 412 LRNSSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTD 471

Query: 241 DERQVLNRIGRLFEDVDCSLNGPEGNYRQRLYRLKTALP 279
            +R  LNR+ RLF DVDC  +G EGNYRQR YRL+T  P
Sbjct: 472 AQRATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 842,150
Number of extensions: 33145
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)