BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0687.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313577|ref|YP_003777669.1| lipid A biosynthesis lauroyl ac...   429   e-121
gi|300313576|ref|YP_003777668.1| lauroyl/myristoyl acyltransfera...    80   2e-16

>gi|300313577|ref|YP_003777669.1| lipid A biosynthesis lauroyl
           acyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 294

 Score =  429 bits (1102), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/305 (71%), Positives = 256/305 (83%), Gaps = 13/305 (4%)

Query: 1   MKALIALMWLLHWLPLPILGRLGEALGSLLFIIMKPRRHITLTNLRLCFPDKTEAERETL 60
           M+ L+A+MWLLHWLPLPILGRLGE +GSLL++ M+PRRHI LTNLRLCFP+KTE ER ++
Sbjct: 1   MRLLLAIMWLLHWLPLPILGRLGEGIGSLLYLYMRPRRHIALTNLRLCFPEKTEEERVSI 60

Query: 61  ARRHFQAYARSALERGILWWASEARLKRLIKVEPRVPVEVIKSGPTILLCPHFVCLEIPG 120
           AR HF+ +ARSALERGILWWA  +RL+RLI+VEP +P++    GPTILL PHFVCLEIPG
Sbjct: 61  AREHFRLFARSALERGILWWAPISRLRRLIQVEPGMPLDTFAKGPTILLAPHFVCLEIPG 120

Query: 121 IALVLNSDLSICTIYSKQQNEVVDQALLKGRSRFRPVTLLSREKGVKPIIRAMRDGLPFI 180
             L + S+ S CTIY+KQ+N+V+D+ALLKGR RFRP TLL+RE+GVKPIIRAMR GLPF+
Sbjct: 121 ATLGVFSEYSACTIYTKQRNDVIDRALLKGRLRFRPATLLAREQGVKPIIRAMRKGLPFL 180

Query: 181 MLPDMDFGLRDAEFVPFFGVPAATLTATARIAAATRANVVPMITTFLPNYKGWKTTFYPA 240
           MLPDMDFG+RDAEFVPFFGVPAATLTATARIAAAT A VVP++ TFLP+YKGWK T+YPA
Sbjct: 181 MLPDMDFGIRDAEFVPFFGVPAATLTATARIAAATGAAVVPVVCTFLPDYKGWKATYYPA 240

Query: 241 WENYPGDDIEATRRMNAFXYDIVEATRRMNAFIEERVLEAPAEYFWAHKRFKTHPPGTPN 300
           W +YPG+             DIV ATRRMNAFIE+RV E PAEYFWAHKRFKT PPG P+
Sbjct: 241 WTDYPGE-------------DIVAATRRMNAFIEDRVREHPAEYFWAHKRFKTRPPGEPD 287

Query: 301 VYGHD 305
           VYG D
Sbjct: 288 VYGRD 292


>gi|300313576|ref|YP_003777668.1| lauroyl/myristoyl acyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 131/301 (43%), Gaps = 34/301 (11%)

Query: 4   LIALMWLLHWLPLPILGRLGEALGSLLFIIMKPRRHITLTNLRLCFPDKTEAERETLARR 63
           L++L  LL +LPLP L  +G  +G L+F++    R    +N+ L           +L R 
Sbjct: 2   LVSLFRLLSFLPLPALHAIGVVVGWLVFLLSPSYRRRLRSNITLA------GHGASLYRA 55

Query: 64  HFQAYARSALERGILWWASEARL---KRLIKVEPRVPVEVIKSGPTILLCPHFVCLEIPG 120
             +A  +   E   +W AS  R+    R++  E        KSG  I L PH  C EI  
Sbjct: 56  VGEA-GKGMFELPFIWCASPRRVLRTARIVNWELVQQALATKSG-VIFLTPHLGCFEIAA 113

Query: 121 IALVLNSDLSICTIYSKQQNEVVDQALLKGRSRFRPVTLLSREKGVKPIIRAMRDGLPFI 180
             +  ++ LS+  +Y   +   +   +   R+R       +   GV+ +++A++ G    
Sbjct: 114 QVVARHTSLSV--LYRPPRKAALKPLIEGARARANLHLAPANLAGVRILLKALKTGQAIG 171

Query: 181 MLPDMDFGLRDAEFVPFFGVPAATLTATARIAAATRANVVPMITTFLPNYKGWKTTFYP- 239
           +LPD      +  +  FFG PA T+T +A++   + A ++      L   +G+   F P 
Sbjct: 172 LLPDQVPQNGEGVWAGFFGKPAYTMTLSAKLQQMSGAPLLLTYAQRLSWGRGYAIHFVPF 231

Query: 240 --AWENYPGDDIEATRRMNAFXYDIVEATRRMNAFIEERVLEAPAEYFWAHKRFKTHPPG 297
             A +  P    +A                 +NA +E  +   PA+Y W++ R+KT PPG
Sbjct: 232 EGALDGTPEQQAQA-----------------INAAMEALIARCPAQYIWSYNRYKT-PPG 273

Query: 298 T 298
            
Sbjct: 274 V 274


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,212
Number of extensions: 34561
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)