BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0685.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313575|ref|YP_003777667.1| S-adenosylmethionine synthetase...   724   0.0  

>gi|300313575|ref|YP_003777667.1| S-adenosylmethionine synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/387 (92%), Positives = 378/387 (97%)

Query: 1   MSNEFLFTSESVSEGHPDKVADQISDAILDAIFEQDPLSRVAAETLCNTGLVVLAGEITT 60
           MS+E+LFTSESVSEGHPDKVADQISDAILDAIF QDP SRVAAETLCNTGLVVLAGEITT
Sbjct: 1   MSSEYLFTSESVSEGHPDKVADQISDAILDAIFTQDPQSRVAAETLCNTGLVVLAGEITT 60

Query: 61  RANVDYIDVARQTIKRIGYDNADYGIDYKSCAVLVAYDKQSPDIAQGVDEGKGLDLDQGA 120
           RANVDYIDVAR+TIKRIGYDNAD+GID+KSCAVLVAYDKQSPDIAQGVDEG+G+DL+QGA
Sbjct: 61  RANVDYIDVARETIKRIGYDNADFGIDHKSCAVLVAYDKQSPDIAQGVDEGRGVDLEQGA 120

Query: 121 GDQGLMFGYACDETPELMPAAIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDGR 180
           GDQGLMFGYAC+ETPELMPAAIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDG+
Sbjct: 121 GDQGLMFGYACNETPELMPAAIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDGK 180

Query: 181 PVAIDTIVLSTQHAPEMEHKAIEEAAIEEIIRPVVPAEWIKNTRYLINPTGRFVIGGPQG 240
           PVAIDT+VLSTQH+PEM+ K I EAAIEEII+PV+PAEW+KNTRYLINPTGRFVIGGPQG
Sbjct: 181 PVAIDTVVLSTQHSPEMDQKDIHEAAIEEIIKPVLPAEWLKNTRYLINPTGRFVIGGPQG 240

Query: 241 DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRCQIQ 300
           DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLA RCQIQ
Sbjct: 241 DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCQIQ 300

Query: 301 VSYAIGIAKPTSVMVTTFGTGKISDEKLAELVLEHFDLRPKGIVQMLDLLRPIYQKTAAY 360
           VSYAIGIAKPTSVMVTTFGTGKISDEKLA+LV EHFDLRPKGIVQMLDLLRPIY KTAAY
Sbjct: 301 VSYAIGIAKPTSVMVTTFGTGKISDEKLAQLVQEHFDLRPKGIVQMLDLLRPIYAKTAAY 360

Query: 361 GHFGREEPEFSWERTDKAAALKAAAGL 387
           GHFGREEPEF+WERTDK AAL+A+AGL
Sbjct: 361 GHFGREEPEFTWERTDKVAALRASAGL 387


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,178,580
Number of extensions: 48377
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)