BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0683.p
         (469 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313574|ref|YP_003777666.1| adenosylhomocysteinase [Herbasp...   855   0.0  

>gi|300313574|ref|YP_003777666.1| adenosylhomocysteinase
           [Herbaspirillum seropedicae SmR1]
          Length = 468

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/470 (87%), Positives = 439/470 (93%), Gaps = 9/470 (1%)

Query: 7   MTTNSTKDYVIADISLAQWGHKEIKIAETEMPGLMAIREEFAAAQPLKGARITGSIHMTI 66
           MTTN T+DY++ADI LA WGHKEIKIAETEMPGLMAIREEFAA+QPLKGARITGS+HMTI
Sbjct: 1   MTTNPTQDYIVADIKLADWGHKEIKIAETEMPGLMAIREEFAASQPLKGARITGSLHMTI 60

Query: 67  QTAVLIQTLEALGAKVRWASCNIYSTQDHAAAAIADKGTPVFAFKGESLDDYWEFTHRIF 126
           QTAVLIQTLEALGA+VRWASCNIYSTQDHAAAAIA  GTPVFA KGE+LD+YWE+THRIF
Sbjct: 61  QTAVLIQTLEALGAQVRWASCNIYSTQDHAAAAIAANGTPVFAIKGETLDEYWEYTHRIF 120

Query: 127 EWQGGENEQANMILDDGGDATLLLHLGTRAEKDASVLNNPGSEEEICLFNSIKKX----- 181
           EW  G    +NMILDDGGDATLLLHLG+RAE D SVL+ P SEE +CLFN+IK+      
Sbjct: 121 EWTDGG--YSNMILDDGGDATLLLHLGSRAEADISVLDKPDSEEAVCLFNAIKRYLAKDA 178

Query: 182 --YSTRLAQVKGVTEETTTGVHRLYQMFKDGKLAFPAINVNDSVTKSKFDNLYGCRESLV 239
             YS RL ++KGVTEETTTGVHRLYQM K+GKLAFPAINVNDSVTKSKFDNLYGCRESLV
Sbjct: 179 SWYSKRLKEIKGVTEETTTGVHRLYQMHKEGKLAFPAINVNDSVTKSKFDNLYGCRESLV 238

Query: 240 DGIKRATDVMIAGKVAVIAGYGDVGKGSAQAMRALSAQVWVTEIDPICALQAAMEGYRVV 299
           DGIKRATDVMIAGKVA++AGYGDVGKGSAQA+RALSAQVWVTEIDPICALQAAMEGYRVV
Sbjct: 239 DGIKRATDVMIAGKVAIVAGYGDVGKGSAQALRALSAQVWVTEIDPICALQAAMEGYRVV 298

Query: 300 TMDYAAEHGDIFVTCTGNYHVITHDHMKKMKDQAIVCNIGHFDNEIEVAALKQYSWENIK 359
           TMDYAAEHGDIFVTCTGNYHVITH+HMKKMKDQAIVCNIGHFDNEIEVAALKQY+WENIK
Sbjct: 299 TMDYAAEHGDIFVTCTGNYHVITHEHMKKMKDQAIVCNIGHFDNEIEVAALKQYTWENIK 358

Query: 360 PQVDHVIFPDGKRIILLAEGRLVNLGCGTGHPSYVMSSSFANQTIAQIELFVNTKNYPVG 419
           PQVDHVIFPDGKRIILLAEGRLVNLGC TGHPSYVMSSSFANQTIAQIELFVNTK+YPVG
Sbjct: 359 PQVDHVIFPDGKRIILLAEGRLVNLGCATGHPSYVMSSSFANQTIAQIELFVNTKDYPVG 418

Query: 420 VYTLPKHLDEKVARLQLKKLNAQLSTLTAEQASYIGVKSDGPYKPDHYRY 469
           VYTLPKHLDEKVARLQLKKLNAQLS LTAEQA+YIGVK +GPYKP+HYRY
Sbjct: 419 VYTLPKHLDEKVARLQLKKLNAQLSELTAEQAAYIGVKVEGPYKPEHYRY 468


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,376,546
Number of extensions: 54183
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 380
Effective length of database: 1,198,455
Effective search space: 455412900
Effective search space used: 455412900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)