BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0680.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313571|ref|YP_003777663.1| 5-formyltetrahydrofolate cyclo-...   177   7e-46

>gi|300313571|ref|YP_003777663.1| 5-formyltetrahydrofolate
           cyclo-ligase [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  177 bits (448), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/174 (57%), Positives = 120/174 (68%), Gaps = 1/174 (0%)

Query: 28  KSVLRTRLLAARKAMTPAAKAAAEAMICSRLLDWLQNNPVASLGVYHPIRQEPDLHPAYN 87
           K  LRT LLA RKA+    +  A+A I  R+L+W     V+SL VY PIR EPDL  AYN
Sbjct: 35  KQQLRTALLARRKALDVQERELADARIGQRVLEWTMRAGVSSLAVYQPIRGEPDLAAAYN 94

Query: 88  ALAAQGVHLSLPIIRGKEAPLEFVRWTPGETLVKDAMGTSAP-AHGETMRPQALLIPCLG 146
           ALAA+GVHL LP++  K+APL F  W PG+ L KDA+GT AP      +RPQALLIPC+G
Sbjct: 95  ALAARGVHLCLPVVVEKDAPLLFRAWQPGDALQKDALGTLAPLPSAPEIRPQALLIPCVG 154

Query: 147 FNAARLRLGYGGGFYDRTLAQEPRPLAIGIAYAEALAEFAGQPHDIALDLILTN 200
           FNAA  RLGYGGGFYDRTLA  PRP A+G+ Y   LA F  Q HD+ ++ ILT+
Sbjct: 155 FNAAGFRLGYGGGFYDRTLAGLPRPRAVGVCYRFGLAAFEAQAHDVPMEAILTD 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 649,820
Number of extensions: 26661
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)