BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0679.p
         (650 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313570|ref|YP_003777662.1| soluble lytic murein transglyco...   941   0.0  

>gi|300313570|ref|YP_003777662.1| soluble lytic murein
           transglycosylase precursor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 666

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/625 (74%), Positives = 536/625 (85%), Gaps = 1/625 (0%)

Query: 27  QKRPSANASQDDVFLALRDASRVDDSATALNLAARLPDYVIPSYVDYYRLKPRVRDFTAP 86
           QKR +A+A+ DD+FLALR A+  D++A A +LA+RL  Y + SYVDYYRLKPRVRD++A 
Sbjct: 42  QKRLAADAAPDDIFLALRQAAATDNAALAQDLASRLSGYELASYVDYYRLKPRVRDYSAS 101

Query: 87  VSEIRDFLSRYDGTAIGDRLRNDWLLALGKTGDWATFDEQYPLFVLNDDVQVKCFALNSR 146
             EIRDFL+R+DG AI DRLRNDWLLALGKTG+WA FDEQYP FVLNDD QVKCFALNSR
Sbjct: 102 EQEIRDFLARWDGQAIVDRLRNDWLLALGKTGNWAVFDEQYPKFVLNDDTQVKCFALNSR 161

Query: 147 ALKGQNVADEARALLTSPKDYGQGCSDLIGTLAQNHQFGEGDVWAQIRQAVEAGSIMVAR 206
           ALKG+NVA+EARALLT+PKDYGQGCSDLI TLAQN QF + DVW QIRQA E G+  VAR
Sbjct: 162 ALKGENVAEEARALLTNPKDYGQGCSDLIATLAQNGQFSQADVWFQIRQAAENGNATVAR 221

Query: 207 RAAIFTDNGDVTLQQVIDKPAPLLARGPGQGRTAHELYIIAIGRAAKSNPQQAAAFLSGA 266
           RAA+  D+GDV++ QV+D+PA +LA+GPG+G   H+LYIIA+GR AKSNP QAA +L+ A
Sbjct: 222 RAAVLVDSGDVSVTQVMDRPALMLAKGPGKGVANHQLYIIALGRIAKSNPAQAATYLNDA 281

Query: 267 S-GLTAQEQAIAWAQIALPASMKLMPEAIDYWRKTKDAPLSYEAYQWKVRIALRAGDWKL 325
              LT+QE A AWAQIAL AS KL PEA DYWR+ KD PL+ +A QWKVR+ALR GDWK 
Sbjct: 282 GRNLTSQEAAQAWAQIALAASYKLAPEASDYWRRAKDTPLTQDAMQWKVRMALRDGDWKT 341

Query: 326 VKSTIEAMPASLRSDITWTYWLARAQKEDGQAESAQRLFQSIASNVSFYGQLATEELGQK 385
           V+ TIEAMPA LRSD  W YWL RA KEDGQ ++A+RLF+SIA N SFYGQLA EELGQK
Sbjct: 342 VRRTIEAMPAPLRSDTAWVYWLGRALKEDGQHDAARRLFESIAPNFSFYGQLALEELGQK 401

Query: 386 IVIPAGPTPPTPAEIAPMAQNSGFKRALKFYDLNMRYEGIREWNWELRRMSDRQLLAAAE 445
           I IP GPTPP   E+A  +QN+GFKR+LKFY LN+R+E IREWNWELR M+DRQLLAAAE
Sbjct: 402 ITIPPGPTPPGAGEVALYSQNAGFKRSLKFYQLNLRFEAIREWNWELRNMTDRQLLAAAE 461

Query: 446 FARQSDVLDRMVNTSDRTKQEMDFTQRFPAPHLSEMTANTRPLGLENAWVYGLIRQESRF 505
           +ARQ+DVLDRMVNTSDRTK E DFTQRFPAPHL EM A T+PLG+ENAWVYGLIRQESRF
Sbjct: 462 YARQNDVLDRMVNTSDRTKSEFDFTQRFPAPHLPEMNAATKPLGMENAWVYGLIRQESRF 521

Query: 506 IKNAKSYVGASGLMQLMPSTAKYVAKKIGLTEFTQDQINDINTNLLLGTSYLNMVLGNLD 565
           IK+A+S+VGASGLMQLMP+TAK+VA+KIG++EFT DQ+NDINTNLLLGTSYL+MVL NL+
Sbjct: 522 IKSARSHVGASGLMQLMPATAKFVARKIGMSEFTADQVNDINTNLLLGTSYLDMVLNNLE 581

Query: 566 GSQALATAAYNAGPGRPRTWRSTLNRSVEGAIFAESIPFNETRGYVKNVMSNATYYAALF 625
           GS+ LATA YNAGPGRPRTWR+TL R+VEGAIFAE IPFNETRGYVKNVMSNATYYAA+F
Sbjct: 582 GSETLATAGYNAGPGRPRTWRATLPRTVEGAIFAEIIPFNETRGYVKNVMSNATYYAAMF 641

Query: 626 ENKPQSLKQRLGVVAPRTNIPTDLP 650
           EN+PQSLKQR+G VAP +N+ TDLP
Sbjct: 642 ENRPQSLKQRMGTVAPNSNVATDLP 666


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,984,909
Number of extensions: 83016
Number of successful extensions: 303
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 559
Effective length of database: 1,188,985
Effective search space: 664642615
Effective search space used: 664642615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)