BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0673.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313565|ref|YP_003777657.1| phenylalanine 4-hydroxylase oxi...   510   e-146

>gi|300313565|ref|YP_003777657.1| phenylalanine 4-hydroxylase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  510 bits (1314), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 244/293 (83%), Positives = 265/293 (90%), Gaps = 4/293 (1%)

Query: 1   MNNSASTDDFFASVAAKSDSGALRGDYSNADKNFVVDQNWAAYTPAQHALWRRLYERQAR 60
           M+ + +TDDFFA+VA KSDSGALRGDYS AD N+VV QNW  YTPAQHALWRRLYERQAR
Sbjct: 1   MSTNPNTDDFFATVATKSDSGALRGDYSQADANYVVAQNWEGYTPAQHALWRRLYERQAR 60

Query: 61  LIPGRACDVFLDSIKALDVSQGIPQFDRTTEALYKATGWQLVAVPGLVPDHTFFEHLANR 120
           LIPGRACDVF++S+KALDVSQGIP+FDRTT+ALYKATGWQLVAVPGLVPD TFFEHLANR
Sbjct: 61  LIPGRACDVFIESLKALDVSQGIPRFDRTTDALYKATGWQLVAVPGLVPDQTFFEHLANR 120

Query: 121 RFPVTVWLREESEFDYIVEPDVFHDFFGHVPLLFNPVFAEHLQEYGKGGLKALKLDGLAF 180
           RFPVTVWLREE EFDYIVEPD+FHDFFGHVPLLFNPVFA HLQEYGKGGLKALKLDGLA+
Sbjct: 121 RFPVTVWLREEHEFDYIVEPDLFHDFFGHVPLLFNPVFANHLQEYGKGGLKALKLDGLAY 180

Query: 181 LARLYWYTIEFGLIQSPEGLRIYGAGILSSGGEVEYSLRGSQQNQQPNRIPFQVERVMRT 240
           LARLYWYTIEFGLIQS  GLRIYGAGILSSGGEVEY L     + +P R+PFQVER+MRT
Sbjct: 181 LARLYWYTIEFGLIQSEAGLRIYGAGILSSGGEVEYCL----SSDKPRRVPFQVERIMRT 236

Query: 241 LYKIDSYQETYFVIRDFQQLFDDTAPDFTALYEQLKAQDALPANTLLPGERNL 293
           LYKID+YQETYFVIRDF+QLF+DTAPDFT  YE+LK Q+ LPAN LL GE NL
Sbjct: 237 LYKIDTYQETYFVIRDFEQLFNDTAPDFTPFYERLKQQEPLPANALLAGETNL 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,989
Number of extensions: 37282
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)