BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0672.p
         (347 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   563   e-162
gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   381   e-107

>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/315 (87%), Positives = 295/315 (93%)

Query: 1   MNAPLPSSERLLLDDISLDDKYSLERGRVFMTGIQALIRLPMLQRQHDLQAGLNTAGYVT 60
           MNAPLP+ +RLLLDD+SLDDKY+LERGRVFMTGIQAL+RLPMLQRQ+D +AGLNTAG++T
Sbjct: 1   MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60

Query: 61  GYRGSPLGTVDQTAAKARKYLDAAHVKFHPGMNEDLAATAVWGTQQVNLFPGAQYDGVFS 120
           GYRGSPLG VDQTA KARKYL+A  +KFHPGMNEDLAAT+VWGTQQVNLF GAQYDGVFS
Sbjct: 61  GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120

Query: 121 LWYGKGPGVDRCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTTAHQSEHILKACGIPV 180
           LWYGKGPGVDRCGDVFKHANMAGTS+HGGVLVIAGDDHAAKSST AHQSEHILKACGIPV
Sbjct: 121 LWYGKGPGVDRCGDVFKHANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180

Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVSLKCVTDIVESGMSVEIDPQRVQPIIPTDFELP 240
           LYPSSVQEYLDYGLHGWAMSRYTGLWV++KCVTD+VESGMSV IDP+RVQ  +P DFELP
Sbjct: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240

Query: 241 LDGLNIRQPDTVLEQETRMNVYKWYAALAYARVNKLNQIIWDSPRARIGIVTAGKSYLDT 300
            DGLNIRQPDTVL QE RM  YKWYAALAYAR NKLN+IIWDSPRARIGI+TAGKSYLDT
Sbjct: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300

Query: 301 RQALYDLGIDEQVAR 315
           RQAL DLGIDEQ AR
Sbjct: 301 RQALEDLGIDEQAAR 315


>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  381 bits (978), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 185/313 (59%), Positives = 232/313 (74%), Gaps = 5/313 (1%)

Query: 7   SSERLLLDDISLDDKYSLERGRVFMTGIQALIRLPMLQRQHDLQAGLNTAGYVTGYRGSP 66
           S++ + L  +SLDDKY+   G ++++GIQAL+RLP+LQ+  D  AGLNTAG+++GYRGSP
Sbjct: 8   STDDVPLAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSP 67

Query: 67  LGTVDQTAAKARKYLDAAHVKFHPGMNEDLAATAVWGTQQVNLFPGAQYDGVFSLWYGKG 126
           LG +D+    A+ +L A  VKF PG+NED+AATAVWGTQQV L   + YDGV+++WYGKG
Sbjct: 68  LGGLDEALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKG 127

Query: 127 PGVDRCGDVFKHANMAGTSQHGGVLVIAGDDHAAKSSTTAHQSEHILKACGIPVLYPSSV 186
           PGVDRCGDV KH N AGTS HGGVL++AGDDH A SST  HQS+HI  A  IP+LYP +V
Sbjct: 128 PGVDRCGDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNV 187

Query: 187 QEYLDYGLHGWAMSRYTGLWVSLKCVTDIVESGMSVEIDPQRVQPIIPTDFELPLDGLNI 246
           QEYLD GLHGWAMSRY+G  V  K + D VES  SV+ DP RVQ  +P+DF +P  GLN 
Sbjct: 188 QEYLDLGLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNA 247

Query: 247 RQPDTVL-----EQETRMNVYKWYAALAYARVNKLNQIIWDSPRARIGIVTAGKSYLDTR 301
           R     L     +QE  M  YK YAALAYAR N+LN+++ DSP+AR+GI+ +GKSYLD  
Sbjct: 248 RLSTDTLGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVL 307

Query: 302 QALYDLGIDEQVA 314
           +AL +LGIDE  A
Sbjct: 308 EALSELGIDEAFA 320


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,075,722
Number of extensions: 45840
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 261
Effective length of database: 1,212,660
Effective search space: 316504260
Effective search space used: 316504260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)