BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0671.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   271   2e-74
gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   163   5e-42

>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  271 bits (693), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 135/137 (98%)

Query: 1   VREFAQGLDEILVVEEKRQILEYQIKEELYNWRDDVRPRVVGKFDDTGEWSGSPREGHGN 60
           VREFAQGLDEILVVEEKRQILEYQ+KEELYNWRDDVRPRVVGKFDDTGEWSGS REGHGN
Sbjct: 335 VREFAQGLDEILVVEEKRQILEYQLKEELYNWRDDVRPRVVGKFDDTGEWSGSQREGHGN 394

Query: 61  WLLPATYELSPAQIARAIATRISKYYAGHPIEQRVKARIAFLEAKEATLNVSTKPDPNKD 120
           WLLPATYEL+PAQIARAIATRIS+Y+AGHP+EQ+V+AR+A+LEAKEATLN+S+KPDP+KD
Sbjct: 395 WLLPATYELNPAQIARAIATRISRYFAGHPVEQQVRARVAYLEAKEATLNISSKPDPDKD 454

Query: 121 RIPHFCSGCPHNTSTAV 137
           RIPHFCSGCPHNTST +
Sbjct: 455 RIPHFCSGCPHNTSTKL 471


>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  163 bits (413), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/139 (59%), Positives = 105/139 (75%), Gaps = 15/139 (10%)

Query: 1   VREFAQGLDEILVVEEKRQILEYQIKEELYNWRDDVRPRVVGKFDDTGEWSGSPREGHGN 60
           VREFAQGLDEILVVEEKRQ++EYQ+KE+LYNWRDDVRPRV+GKFD+ GEW  +PR   G 
Sbjct: 341 VREFAQGLDEILVVEEKRQMVEYQLKEQLYNWRDDVRPRVIGKFDEKGEWV-APR---GE 396

Query: 61  WLLPATYELSPAQIARAIATRISKYYAGHPIEQRVKARIAFLEAKEATLN--VSTKPDPN 118
           WLL +  + S AQIAR IA RI++++        +KAR+AFL+AK+A L+  V+T P P 
Sbjct: 397 WLLTSKADFSVAQIARVIAARIARFHT----SDLIKARLAFLDAKDAVLSKAVNTPPRP- 451

Query: 119 KDRIPHFCSGCPHNTSTAV 137
                ++CSGCPHN+ST V
Sbjct: 452 ----AYYCSGCPHNSSTRV 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 489,142
Number of extensions: 20125
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)