BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0670.p (713 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1164 0.0 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 778 0.0 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1164 bits (3012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/716 (78%), Positives = 617/716 (86%), Gaps = 6/716 (0%) Query: 1 MVTWMDRESTIFSHMGGEGVTWVGQAPFTSEKHVFSNLGDGTYFHSGLLAVRAAVAGKVN 60 MVTWMDRE+ +F+HMGGEGVTWVGQAPFT EKHVF+NLGDGTYFHSGLLAVRA+VA KVN Sbjct: 486 MVTWMDRETKLFTHMGGEGVTWVGQAPFTDEKHVFANLGDGTYFHSGLLAVRASVAAKVN 545 Query: 61 MTYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPAGTPWAEGV 120 +TYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYP GT WAEGV Sbjct: 546 ITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPVGTQWAEGV 605 Query: 121 TIRHRSELDAVQRELREVPGVSAMIYDQTCASEKRRRRKRDAYPDPAKRAVINEAVCEGC 180 TIRHRSELDAVQRELRE PGVSAMIYDQTCASEKRRRRKR+AYPDPAKRAVINEAVCEGC Sbjct: 606 TIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRAVINEAVCEGC 665 Query: 181 GDCSVQSNCLSVEPLETEFGRKRQINQSSCNNDYSCVNGFCPSFVTVEGGKLKKAKRVAV 240 GDCSVQSNCLSVEPLETEFGRKRQINQSSCN DYSCVNGFCPSFVTVEGG+LKK R Sbjct: 666 GDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGGQLKKPARAQA 725 Query: 241 EKTEAAAQGPLLPEPQLPAMGDTYGIVVTGIGGTGVITIGQILAMAAHVEGKACSVLDMS 300 + A P LPEP LP + YGI+VTG+GGTGVITIGQI+AMAAHVEG+ACSVLDMS Sbjct: 726 DVGPAL---PSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRACSVLDMS 782 Query: 301 GLAQKGGPVMSHVRLSERPDDLYSTRVGTGAADLVIGCDVIVTASRDALSRMGEGRTHAA 360 GLAQKGGPVMSHVR++E ++STRVGTG ADLVIGCDVIVTASRDALSRMGEGRTHAA Sbjct: 783 GLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMGEGRTHAA 842 Query: 361 VNATRMPTAAFVRNPDWQFPAESAEGSIQSACGKDRVALIDAGNIATALMGDAIATNMFM 420 VN+T+MPTAAFVRNPDWQFP S+EG I ACG+D ++L+DAG IATALMGDAIATNMFM Sbjct: 843 VNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDAIATNMFM 902 Query: 421 LGYAWQRGWVPLSEGALLKAIELNALSVEFNKQAFGWGRAAAHDADMVAQAARRNGMTAQ 480 LGYAWQ+GWVPLSE ALL+AIELNAL VEFNKQAF WGRAAAHD V AA RNGM+AQ Sbjct: 903 LGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAGRNGMSAQ 962 Query: 481 VIDFKRPPSLEEVLAKRVDFLTQYQNAAYARRYSDFVAQAQHAEAALGEAGKAMKLSTAV 540 VI+FKR P+L+E++ +RV FLT Y NAAYAR Y DFV Q + E+ALGEAG+ +KLS AV Sbjct: 963 VIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRGLKLSRAV 1022 Query: 541 ATYLFKLMAYKDEYEVARLYTAPAFREKIAGMFEGDYQLKFHLAPPLLAKHDSKGHLIKK 600 A+YLFKLMAYKDEYEVARL+ PAFR KIAGMFEGDY+L+FHLAPPLLAK D KGHL K+ Sbjct: 1023 ASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDDKGHLRKQ 1082 Query: 601 EYGPWMMRAFGVLAKLRFLRNTPLDVFGYTDERKQERALIGEYCKTVGGLLSRLNADNLA 660 +G WMM FGVLA+LRFLR T LD F YT+ER+QERALI EY T+ LL RL +NL Sbjct: 1083 AFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDRLTPENLE 1142 Query: 661 QATAIARIPEDIRGYGHVKERHLKAAKQKEADLLRMFD---AGQKPHVPEGGKQAA 713 Q TA+ARIPE+IRGYGHVKERHLKAA +K+A LL A +P P GG Q A Sbjct: 1143 QITAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQAAAQTQPQSPPGGGQQA 1198 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/694 (56%), Positives = 503/694 (72%), Gaps = 11/694 (1%) Query: 9 STIFSHMGGEGVTWVGQAPFTSEKHVFSNLGDGTYFHSGLLAVRAAVAGKVNMTYKILYN 68 + + +HMGGEG W+GQAPF+ HVF+NLGDGTYFHSG LA+RAAVA KVNMTYKILYN Sbjct: 490 NKLTTHMGGEGAPWIGQAPFSKVPHVFANLGDGTYFHSGYLAIRAAVAAKVNMTYKILYN 549 Query: 69 DAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKYPAGTPWAEGVTIRHRSEL 128 DAVAMTGGQ DG + MI++Q+AAE V+ I +V+++P +Y + VT+ R ++ Sbjct: 550 DAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRYADRSSLPAAVTVHDRKDM 609 Query: 129 DAVQRELREVPGVSAMIYDQTCASEKRRRRKRDAYPDPAKRAVINEAVCEGCGDCSVQSN 188 DAVQRELRE+PGV+ +IYDQTCA+EKRRRRK+ YPDP +R IN AVCEGCGDC VQSN Sbjct: 610 DAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRLFINAAVCEGCGDCGVQSN 669 Query: 189 CLSVEPLETEFGRKRQINQSSCNNDYSCVNGFCPSFVTVEGGKLKKAKRVAVEKTEAAAQ 248 C S+ PLET+ GRKR I+QSSCN DYSCV GFCPSFVTV GGKL+K+ R V + E Sbjct: 670 CTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGGKLRKS-RTGVSRQEERDD 728 Query: 249 GPLLPEPQLPAMGDTYGIVVTGIGGTGVITIGQILAMAAHVEGKACSVLDMSGLAQKGGP 308 LLP+P LPA + I++ GIGGTGVITIG ++ MAAH+EGK SVLDM+G++QK G Sbjct: 729 FGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEGKGASVLDMTGMSQKNGS 788 Query: 309 VMSHVRLSERPDDLYSTRVGTGAADLVIGCDVIVTASRDALSRMGEGRTHAAVNATRMPT 368 V SHVR++ R D + + R+ TG ADLV+GCD++ + DA+S+M GRT A VN + P Sbjct: 789 VTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISKMRPGRTRAVVNLHQQPP 848 Query: 369 AAFVRNPDWQFPAESAEGSIQSACGKDRVALIDAGNIATALMGDAIATNMFMLGYAWQRG 428 F RNPDW+FP E + I + G+ + IDA +ATALMGD+IATN+FMLGYAWQRG Sbjct: 849 GQFARNPDWEFPVEEVKALIVESVGQ-QADFIDATRLATALMGDSIATNLFMLGYAWQRG 907 Query: 429 WVPLSEGALLKAIELNALSVEFNKQAFGWGRAAAHDADMVAQAARRNGMTAQVIDFKRPP 488 +PL+E +LL+AIELN ++V+ NK AF WGR AA D V Q A + AQ + P Sbjct: 908 ELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVDLARVEQIA----VPAQPVLLHLPQ 963 Query: 489 SLEEVLAKRVDFLTQYQNAAYARRYSDFVAQAQHAEAALGEAGKAMKLSTAVATYLFKLM 548 SL++++ +RV LT YQ+AAYA ++ + V + AEAALG KL+TAVA L +LM Sbjct: 964 SLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSD----KLATAVARNLSRLM 1019 Query: 549 AYKDEYEVARLYTAPAFREKIAGMFEGDYQLKFHLAPPLLAKHDSKGHLIKKEYGPWMMR 608 AYKDEYEVARLYT F++++A FEGD+ L FHLAPPLLA+ D +GHL+K YG W+M+ Sbjct: 1020 AYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARKDGQGHLLKARYGGWVMQ 1079 Query: 609 AFGVLAKLRFLRNTPLDVFGYTDERKQERALIGEYCKTVGGLLSRLNADNLAQATAIARI 668 AF +LA+++ LR LD+FG+T+ER+ ER LI +Y + V LL RL A NLA A +A++ Sbjct: 1080 AFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLLPRLTAANLATAIELAQL 1139 Query: 669 PEDIRGYGHVKERHLKAAKQKEADLLRMF-DAGQ 701 PE +RGYGHVK + + A + ++ LL +F AGQ Sbjct: 1140 PEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQAGQ 1173 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,170,937 Number of extensions: 87649 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 2 Length of query: 713 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 621 Effective length of database: 1,184,250 Effective search space: 735419250 Effective search space used: 735419250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)