BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0668.p
         (160 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313561|ref|YP_003777653.1| transmembrane disulfide bond fo...   174   4e-45

>gi|300313561|ref|YP_003777653.1| transmembrane disulfide bond
           formation B oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 164

 Score =  174 bits (440), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 1   MKSSKSLFLSVALLCVALLGVALYLQIVEEMMPCPLCIIQRYIFVAIAIICIIFAFLPPG 60
           MKSSK +FL VAL+C+ALLG A+YLQIVEEM PCPLC+IQRY+FV +A   +I AFLP  
Sbjct: 1   MKSSKPVFLLVALVCIALLGFAMYLQIVEEMQPCPLCVIQRYMFVLVAAFALIGAFLPEA 60

Query: 61  SAKLGAGLGALAALGGIATAGWHLWVQAHPGTSCGIDPLETSLNTIPTATLFPTLFKADG 120
           + +  A L ALAALGG  TA WHL+V+AHPG SC  DPLET+LN +PTA L+P +F ADG
Sbjct: 61  ARRASAALAALAALGGAGTAIWHLYVKAHPGVSCTTDPLETALNQLPTAKLWPQMFTADG 120

Query: 121 LCANPY-PFLGLSIPQWSLIWFAIIAIVLVRRIVKR 155
            C+ P+ P  GL IP WSLIWFA++A+VL+ ++++R
Sbjct: 121 FCSAPWPPVFGLQIPTWSLIWFAVLALVLIVQMLRR 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 277,007
Number of extensions: 7090
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,250,540
Effective search space: 102544280
Effective search space used: 102544280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)