BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0659.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313556|ref|YP_003777648.1| septum site-determining protein...   239   4e-65

>gi|300313556|ref|YP_003777648.1| septum site-determining protein
           [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  239 bits (611), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 124/130 (95%)

Query: 1   VTNPEVSSVRDSDRILGIIQAKSRRALSGGEPVKEHLLITRYSPKRVEAGEMLSYADVQE 60
           VTNPEVSSVRDSDRILGIIQAKSRRA +GGEPVKEHLLITRYSPKRVE GEMLSY DVQE
Sbjct: 142 VTNPEVSSVRDSDRILGIIQAKSRRASAGGEPVKEHLLITRYSPKRVEDGEMLSYTDVQE 201

Query: 61  ILRIPLIGIIPESESVLHASNQGNPAIHLKETDVSEAYQDLVSRFLGEDLPLRFTSYEKP 120
           ILRIPLIGIIPESESVL ASNQG+PAIHLK+TDV++AYQD+VSRFLGE + LRFT+YEKP
Sbjct: 202 ILRIPLIGIIPESESVLQASNQGSPAIHLKDTDVAQAYQDVVSRFLGETVELRFTTYEKP 261

Query: 121 GLLQRIFGGK 130
           GLLQRIFGGK
Sbjct: 262 GLLQRIFGGK 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.136    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,069
Number of extensions: 16286
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)