BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0647.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   277   2e-76
gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...    71   3e-14

>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  277 bits (709), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 139/147 (94%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAAS+INWGVYYTARVQAVLDGS
Sbjct: 233 VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVYYTARVQAVLDGS 292

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK+ T+W+GLKENGIDL  FNPELPADVK LVEERKKGI DGSAPIWKGPIKDN GKE +
Sbjct: 293 WKSSTSWIGLKENGIDLAAFNPELPADVKTLVEERKKGIVDGSAPIWKGPIKDNAGKEVL 352

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
            KDAVADDGFLHG+KFYVEGV+GKVPG
Sbjct: 353 GKDAVADDGFLHGIKFYVEGVDGKVPG 379


>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score = 71.2 bits (173), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 2/137 (1%)

Query: 11  VVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGSWKTDTTWLGL 70
           +V+TA+++GV   G+ +   S  PK +L  +  NW   YT  V+A L+G    +    GL
Sbjct: 229 IVETAEKRGVMTTGYHASQASLAPKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGL 288

Query: 71  KENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQVA--KDAVADD 128
           K+N + +  +   + A  K   +E K  +  G   I+KGPIKDN G   +      V  D
Sbjct: 289 KDNFVKMSPYGAAVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTD 348

Query: 129 GFLHGVKFYVEGVEGKV 145
             L  + + V GV G+V
Sbjct: 349 VVLEKMNYLVAGVVGQV 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 509,015
Number of extensions: 21188
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)